NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194133_10002598

Scaffold Ga0194133_10002598


Overview

Basic Information
Taxon OID3300021091 Open in IMG/M
Scaffold IDGa0194133_10002598 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27500
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (40.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002243Metagenome / Metatranscriptome578Y
F022640Metagenome / Metatranscriptome213Y
F027828Metagenome / Metatranscriptome193Y
F034907Metagenome / Metatranscriptome173Y
F055691Metagenome / Metatranscriptome138Y
F105081Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0194133_1000259814F027828GGAMTEELLNEKQLTALRDMLYVYKDLQKEVHNYPPEDTLFTKTQFEIFNIFDIK
Ga0194133_100025983F002243N/AMQSKDGTMLVGFYPVETSFGDISEEWCLQVLSWKGVDQISKKYLNRVEKAIAIRDRLAYDYVITGDNINSPQLGNPFYGAV
Ga0194133_100025984F055691N/AMMTYTSPLTSKVYEIVETSHTRNAWDLQGNLTPYVQSVFDIYYEGQKVQFALSAEGVADSVAHLENPGPDISSRFD
Ga0194133_100025985F105081N/AMISLPNPTSKMTLTQDQLYKLTQLYAERVVDNMDMRDLCAFAYERIVDNMIDYNESELMEELSYHYDEEVLNDLLESVTNDDQA
Ga0194133_100025987F022640N/AMRIAFLIATLALGLRVGLIAHATTNEYQEQQAELFCQANTNYCNSK
Ga0194133_100025988F034907N/AMVTLVIGGVIFSTFLTLFYLEDRDGGGVYDPDPSASYRHKKSNK
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