Scaffold Ga0210404_10004878

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10004878
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5395
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025584	Metagenome / Metatranscriptome	201	Y
F034330	Metagenome / Metatranscriptome	175	Y
F035065	Metagenome / Metatranscriptome	173	Y
F037102	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000487810	F037102	AGGAGG	MNESGLEFTEQVLRPAVHEKILLRAAELVALGWTRGTAARDAEERKVRSTAPQATAWCVVGAVDRALYELWALDVYALLGLDVDAYDTAPCPSELLLALRRSFQRVLGRRDLAHWNDHGCPGPAAAEELLREAAARAARS
Ga0210404_1000487811	F035065	GGAGG	MTDREVEAISDFLRHFGSFGCRQICVRRAEPKPRTPEDVGRFVLETLATWGAEGLDAGRLYKVATIAIHFEAYKLPGVICMPACCRPWGEVEPACPPGPGRPLTGAQLQQALLRAVPIGSLRGPDAPLPDDLDEDLKRTGLAP
Ga0210404_1000487812	F025584	GAGG	VGDPRLDEPRRWGAFWIHHEAEELRVHHRTTIPAGDARALVVTLLASGRVPPLQATLFDSESADAGPGLERFWGTTCRCDAVVYLILFINERCLVLALSG
Ga0210404_100048787	F034330	GGAGG	MRGVETLTLVLIATVLFMWVVLGHSTPDERARLQDSMGQSTGIAWR