Scaffold Ga0210404

Basic Information
Taxon OID	3300021088 Open in IMG/M
Scaffold ID	Ga0210404_10000117 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53863
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (82.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

53863

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (82.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F000217	Metagenome / Metatranscriptome	1557	Y
F009833	Metagenome / Metatranscriptome	312	Y
F035434	Metagenome / Metatranscriptome	172	Y
F040835	Metagenome / Metatranscriptome	161	Y
F069092	Metagenome / Metatranscriptome	124	Y
F094341	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000011738	F000063	N/A	MLAEGVWAEVKVGAEHLRLFSEHNAIGVQASVYIEQGKDKAAAYAEVHLKRAGNLELPPLEWKRSRSA
Ga0210404_1000011742	F040835	AGG	VRSDPLAMRMEPIFTAAERAEEYLERIAALTGAEQDDDGTYHLTAGRIRFRVDYKFVGVISHGGGSTCFSVVAYPDLPRAEVIASALLQLKNNPRLFEKWRHRHGDTFKANGQMFGDTYRLTRGGT
Ga0210404_1000011743	F035434	GGGGG	VLLGYLMLPPALSLIPFFALTLCRFVFAGMGWRWLVGEIDAPRRPQNGLLEHGLHILDPAGLTSVAGELENRVGGADPIDRKYRAQSYLRRIVALTGATQIGSGYALDVGTTRFQVRDRYVRRVRDITDPKCTHEQTCFYPAHKEMPKAEQIATALLQLANNPALFDRWAVQNGVAFKADGQVFTSAQ
Ga0210404_1000011744	F000217	AGGAG	MTAKIQTFSSHGDRTLLEYDPAAADMDEVNRVISEYEAKTGAQPFDMATGERIEKITSEQREVLMVHPIAGG
Ga0210404_1000011748	F009833	GGAGG	MHSPFEILKKEPAGSFRRFEPVSDLASANIRIRELTTLSPGEYVVFDHRTHHDIAVGRLSFWVDHRRE
Ga0210404_1000011749	F069092	AGGAG	MASPRPAMTNEQKILAALARIESKLDDTERRVKAVQQDLNRVKRIVRG
Ga0210404_100001176	F094341	AGGAG	MTFDELWRLNLDRDGAAGDSVDKAETVGLLAVLGENPNEQLLTADDCVCFC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210404_10000117

Overview

Ecosystem & Geography

Associated Families

Sequences