Basic Information | |
---|---|
Family ID | F094341 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 57 residues |
Representative Sequence | MTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP |
Number of Associated Samples | 67 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 83.96 % |
% of genes near scaffold ends (potentially truncated) | 12.26 % |
% of genes from short scaffolds (< 2000 bps) | 69.81 % |
Associated GOLD sequencing projects | 60 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.26 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (88.679 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (44.340 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.453 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (45.283 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 21.18% β-sheet: 0.00% Coil/Unstructured: 78.82% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.26 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Iron-Sulfur Acid Spring Watersheds Soil Vadose Zone Soil Terrestrial Soil Grasslands Soil Soil Forest Soil Hardwood Forest Soil Forest Soil Soil Switchgrass Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12053J15887_103231302 | 3300001661 | Forest Soil | MTFDELWRLNLDPDGACVDSVDNDEAVGLIAPPGENPNELQLSAEDCLFLLDVGIRP* |
JGI25614J43888_100032423 | 3300002906 | Grasslands Soil | MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP* |
JGI25613J43889_101762211 | 3300002907 | Grasslands Soil | MTFDELWRLNLDRDEARVDSVDKAEEVGLITVPGENPNALQLTPEDCVFLLEMGIRP* |
JGI25616J43925_100429822 | 3300002917 | Grasslands Soil | MTFDELWRVNLDQERARGDSVEKAEAVGLLAVPGENANELLLTAEDCVFLSALGIRA* |
Ga0070764_107303842 | 3300005712 | Soil | MTFDELWRANLDQERACGDSAEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA* |
Ga0075018_102560332 | 3300006172 | Watersheds | MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSTLGIKA* |
Ga0070765_1004749662 | 3300006176 | Soil | MNFDELWRVNLDQQRARGDSVKKTEAVGLLAVPGENANELLLTAEDCVFLSALEIRA* |
Ga0073928_100038188 | 3300006893 | Iron-Sulfur Acid Spring | MTFDELWRLNLDRGDARADSVVKAEVVGLVAAPGENPNELLLTSDDCVFLLEVGINP* |
Ga0099793_100587932 | 3300007258 | Vadose Zone Soil | MPYRRRKPMTFDELWRLDLDGDGARGDSVDKAEAVGLIAVQGENPNELLLTAGDGVFLSEVGIRP* |
Ga0099793_103626491 | 3300007258 | Vadose Zone Soil | VTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCVFLLEVGIRP* |
Ga0134123_124438932 | 3300010403 | Terrestrial Soil | FAMPCGRREPMTFDELWRVNLDQERARGDSVEKAGAVGLLAVPGENANELLLTAEDCEFLSALGIRA* |
Ga0137392_102879182 | 3300011269 | Vadose Zone Soil | VKEKPMTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP* |
Ga0137392_109032862 | 3300011269 | Vadose Zone Soil | MTFDELWRLNLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA* |
Ga0137363_100042009 | 3300012202 | Vadose Zone Soil | MTFDELWRLNLHRDCARADSVDKAEAVGLLAVVGENANELQMTAEDCVFLFEVGIRP* |
Ga0137363_100673463 | 3300012202 | Vadose Zone Soil | MTFDELWRLDFDRKRVGVDSDNKAKALGLIAVLGENPNELLLTAEDCVFLLEVGIRP* |
Ga0137363_103527252 | 3300012202 | Vadose Zone Soil | MTFDELWRLNLVRERPRVDSVDQAETAGPLAVRDGNANEPLLTAEDCVFLLEVGIKPWKSTCAVRK* |
Ga0137363_107763192 | 3300012202 | Vadose Zone Soil | MTFDELWRVNLDQERARGDSVEKAEALGLLAVPGENANELLLTAEDCVFLSALGIRA* |
Ga0137399_101310421 | 3300012203 | Vadose Zone Soil | PSSQWFFVMPYRRRKPMTFDELWRLDLDGDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP* |
Ga0137399_104756792 | 3300012203 | Vadose Zone Soil | MTFDELWRVNLDQERARGDSVEKAEAVGLLAVPGENANELLLTAEDCVFLS |
Ga0137399_110692922 | 3300012203 | Vadose Zone Soil | PMTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCGFLLEVGIRP* |
Ga0137399_113465951 | 3300012203 | Vadose Zone Soil | ELWRLELDRARARLDSVNKTEAVGLIAVPGQTLNELLLTADDCVFLSVVGIRP* |
Ga0137399_115746342 | 3300012203 | Vadose Zone Soil | VKEKPMTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP* |
Ga0137362_100024224 | 3300012205 | Vadose Zone Soil | MTFDELWRLDFDRKRVGVDSDNKAKALGLIAVLGENPNELLLTAEDCVFLLEVEIRP* |
Ga0137362_111039591 | 3300012205 | Vadose Zone Soil | LDLDRERARADSVDKTEAVGLIAVGGQNPNELLLTAEDCVFLLKVGISA* |
Ga0137358_100245365 | 3300012582 | Vadose Zone Soil | MTFDELWRVNLDQERARRDSVEKAEAVGLLEVPGENANELLLTAEACVLLSALGIRA* |
Ga0137358_100842322 | 3300012582 | Vadose Zone Soil | MPYSRRKSMTFDELWRLNLDRDEARVDSVDSAEAVGLIAVPGDNPNALQLTPEDCVFLLEMGIRP* |
Ga0137358_101062303 | 3300012582 | Vadose Zone Soil | MNFDELWRLNLDRDRALVDSVDKTEAVGVLVAPAANPNELLLTAGDCMFLLDVGIRP* |
Ga0137358_102904062 | 3300012582 | Vadose Zone Soil | MTFDELWRLDFDRKRVGVDSSNKAKALGLIAVLGENPNELLLTAEDCVFLLEVGIRP* |
Ga0137358_104805812 | 3300012582 | Vadose Zone Soil | MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTSEDCVCLSHVGIRP* |
Ga0137398_103764141 | 3300012683 | Vadose Zone Soil | MTFDEMWRLDFDQKHVGVDSDNTAKALGLIAVLGENPNELLLTAEDCVFLQEVGIRP* |
Ga0137398_106390132 | 3300012683 | Vadose Zone Soil | MTFDELWRVNLDQERVRGDSVEKAEALGLLAVPGENANELLLTAEDCVFLSALGIRA* |
Ga0137398_107584052 | 3300012683 | Vadose Zone Soil | MNFDELWRLNLDRDRAHVDSVDQTEVVGVVVAPAANPNELLLTAGDCMFLLDVGIRP* |
Ga0137397_100574961 | 3300012685 | Vadose Zone Soil | MTFDELWRLNLDGERAGGDAVDKEEAAALIVDPGQNPNEFLLTAEDCVFLLEVGIRP* |
Ga0137396_100764923 | 3300012918 | Vadose Zone Soil | MPYRRRKPMTFDELWRLDLDGDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP* |
Ga0137396_108711742 | 3300012918 | Vadose Zone Soil | MKEKPMTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP* |
Ga0137394_101234833 | 3300012922 | Vadose Zone Soil | DELWRLELDRARARLDSVNKTEAVGLIAVPGQTLNELLLTADDCVFLSVVGIRP* |
Ga0137359_100660777 | 3300012923 | Vadose Zone Soil | MNFDELWRLNLDRDRAHVDSVDQTEVVGVLVAPAANPNELLLTAGDCMFLLDVGIRP* |
Ga0137359_104080492 | 3300012923 | Vadose Zone Soil | MPYRRRKSMTFDELWRLNLDRDEARVDSVDKAEEVGLITVPGENPNALQLTPEDCVFLLEMGIRP* |
Ga0137419_117030581 | 3300012925 | Vadose Zone Soil | MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCGFLLEVGIRP* |
Ga0137416_101217922 | 3300012927 | Vadose Zone Soil | VKEKPMTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLLDVGIRP* |
Ga0137416_103137012 | 3300012927 | Vadose Zone Soil | MTFDELWRLNLDPDGACVDSVDNDEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP* |
Ga0137416_121381622 | 3300012927 | Vadose Zone Soil | MTFDELWRLDLERERARADSVDKTEAVGLIAVRGQDPKELLLTAEDCGFLLEVGIRP* |
Ga0137410_107106571 | 3300012944 | Vadose Zone Soil | RLELDRARARLDSVNKTEAVGLIAVPGQTLNELLLTADDCVFLSVVGIRP* |
Ga0163162_111033901 | 3300013306 | Switchgrass Rhizosphere | MTFDELWRVNLDQERARGDSVEKAGAVGLLAVPGENANELLLTAEDCEFLSALGIRA* |
Ga0179590_11110442 | 3300020140 | Vadose Zone Soil | MTFDELWRVNLDQERARRDSVEKAEAVGLLAVPGENANELLLTAEDCVFLSALGIRA |
Ga0179592_100597052 | 3300020199 | Vadose Zone Soil | MTFDELWRVNLDQERARRDSVEKAEAVGLLEVPGENANELLLTAEDCVFLSALGIRA |
Ga0179592_105179772 | 3300020199 | Vadose Zone Soil | MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCVFLLEVGIRP |
Ga0210407_100385081 | 3300020579 | Soil | MTFDEVWRLDFDQKHIGVDLDNTAKALGLIAVLGENPNELLLTAEDCVFLPEVGIRP |
Ga0210407_102442862 | 3300020579 | Soil | MTFDELWRLILDPDSACVDSVDKDEAVGLIAPSAEKPNELQLTTEDCVFLLDVGIRL |
Ga0210403_102934703 | 3300020580 | Soil | MTFDELWRLNLDPEGACVDSVDNDEAVGLIAPPVENPNELQLTAEDCVFLSDVGIRL |
Ga0210403_103265793 | 3300020580 | Soil | MTFDELWRLNLDPDSACVDSVDKDEAVGLIAPSAEKPNELQLTTEDCVFLLDVGIRL |
Ga0210399_102548703 | 3300020581 | Soil | MTFDELWRVNLDQERARGDSVEKAEAIGLRAVSSDNANELLLTAEDCVFLSALGIKA |
Ga0215015_103867852 | 3300021046 | Soil | MNFDELWRVNLDQQRARGDSVEKTEAVGLLAVPGENANELLLTAEDCVFLAALGIRA |
Ga0210404_100001176 | 3300021088 | Soil | MTFDELWRLNLDRDGAAGDSVDKAETVGLLAVLGENPNEQLLTADDCVCFC |
Ga0210404_100141204 | 3300021088 | Soil | MTFDELWRLNLDPDGACVDSVDNDEAVGLIAPPGENPNELQLSAEDCLFLLDVGIRP |
Ga0210404_104570561 | 3300021088 | Soil | MTFDELWRLNLDRERAGGDTVDKEEAVALIVDPGQNPNEFLLTAEDCVFLLEVGIRP |
Ga0210406_101490333 | 3300021168 | Soil | MTFDELWRVNLDQERARGDSVEKAEAIGLRAVSSDNANELLLTAEDCVFLSALG |
Ga0210400_101208063 | 3300021170 | Soil | MTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP |
Ga0210400_103235492 | 3300021170 | Soil | MTFDELWRLNLDRERVGGDTVDKEEAVALIVDPGQNPNEFLLTAEDCVFLLEVGIRP |
Ga0210405_100349594 | 3300021171 | Soil | MTFDELWRANLDQERACGDSVEKAGAIGLRPVPGENANELLLTAEDW |
Ga0210383_106243192 | 3300021407 | Soil | MTFDELWRANLDQERACGDSAEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA |
Ga0210384_100689163 | 3300021432 | Soil | MTFDELWRVNLDQERARGDSVEKAEAIDLRAVSSDNANELLLTVEDW |
Ga0210410_113351442 | 3300021479 | Soil | MTFDELWRVNLDQERARGDSVEKAEAIGLRAVSSDNASELLLTAEDW |
Ga0210409_100740862 | 3300021559 | Soil | MNFDELWRVNLDQQRARGDSVKKTEAVGLLAVPGENANELLLTAEDCVFLSALEIRA |
Ga0212123_1000360835 | 3300022557 | Iron-Sulfur Acid Spring | MTFDELWRLNLDRGDARADSVVKAEVVGLVAAPGENPNELLLTSDDCVFLLEVGINP |
Ga0179589_105489671 | 3300024288 | Vadose Zone Soil | MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQNPKELLLTAEDCVFLLEVGIRP |
Ga0137417_10212162 | 3300024330 | Vadose Zone Soil | MTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGISP |
Ga0179591_10463213 | 3300024347 | Vadose Zone Soil | MTFDELWRLNLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA |
Ga0209438_11323401 | 3300026285 | Grasslands Soil | MTFDELWRLNLDRDGARVASVDKADAVGLIAVPGENPNELLLTAVDCVFLSEVGIRP |
Ga0209240_100025218 | 3300026304 | Grasslands Soil | MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP |
Ga0209131_10178984 | 3300026320 | Grasslands Soil | MTFDELWRLNLDREEASVDSVDKAEAVGRIAVPGENPNAQQLTAEDCVFLFEMGIRP |
Ga0209131_10228143 | 3300026320 | Grasslands Soil | MTFDELWRLNLDRDEARVDSVDKAEEVGLITVPGENPNALQLTPEDCVFLLEMGIRP |
Ga0209131_10963382 | 3300026320 | Grasslands Soil | MTFDELWRVNLDQERVRGDSVEKAEALGLLAVPGENANELLLTAEDCVFLSALGIRA |
Ga0257146_10179011 | 3300026374 | Soil | MTFDELWRLNLDRDSASADSVDKAEAVGVLAVLGENPNELRITADDWAFLFEVGIRP |
Ga0257169_10036603 | 3300026469 | Soil | MTFDELWRLDFDRKRVGVDSDNKAKALGLIAVLGENPNELLLTAEDCVFLLEVGIRP |
Ga0257147_10025693 | 3300026475 | Soil | MTFDELWRLNLDRDSAGADSVDKAEAVGVLAVLGENPNELRLTADDCAFLFEVGIRP |
Ga0257153_10011562 | 3300026490 | Soil | MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCMFLLEVGIRP |
Ga0257153_10184632 | 3300026490 | Soil | VELDFDQKHVGVDSDNTAKALGLIAVPGENPNELLLTAEDCVFLQEVGIRYTRAVSPAG |
Ga0257153_10430632 | 3300026490 | Soil | MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSAPGIKA |
Ga0257157_10019422 | 3300026496 | Soil | MTFDELWRLDLDGDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP |
Ga0257165_10395321 | 3300026507 | Soil | MTFDELWRLNLDRDSAGVDSVDKAEAVGVLAVLGENPNELRLTADDCAFLFEVGIRP |
Ga0257168_10348302 | 3300026514 | Soil | RKPTTFDELWRLDLDRDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP |
Ga0257168_10747311 | 3300026514 | Soil | MNFDELWRLNLDRDRAHVDSVDKTEVVGVLVAPAASPNELLLTAGDCMFLLDVGIRP |
Ga0257168_11356292 | 3300026514 | Soil | TPSSTRKPMTFDELWRLDLDRERARVDSVDKTEAVGLIAVRGQNPNELLLTAEDGVFLVEVGIRP |
Ga0209648_1000128920 | 3300026551 | Grasslands Soil | MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA |
Ga0209648_101819432 | 3300026551 | Grasslands Soil | MTFDELWRLNLHRDCARADSVDKAEAVALFAVVGENANELQMTAEDCVFLFEVGIRP |
Ga0179593_10183401 | 3300026555 | Vadose Zone Soil | MTFDELWRVNLGQERARRDSVEKAEAVGLLEVPGENANELLLTAEDCVFLSALGIRA |
Ga0209076_11203761 | 3300027643 | Vadose Zone Soil | MTFDELWRLDLDGDGARGDSVDKAEAVGLIAVQGENPNELLLTAGDGVFLSEVGIRP |
Ga0209217_100369510 | 3300027651 | Forest Soil | MTFDELWRLNLDRDDTCVDSADKTEAVGLIAVPSENPNELLLTAEDCVFLSEVGIRP |
Ga0209588_11962602 | 3300027671 | Vadose Zone Soil | VLSGSEKPMTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP |
Ga0209488_102459222 | 3300027903 | Vadose Zone Soil | MTFDEMWRLDFDQKHVGVDSDNTAKALGLIAVLGENPNELLLTAEDCVFLQEVGIRP |
Ga0209488_106994221 | 3300027903 | Vadose Zone Soil | MTFDELWRLDLDRERARADSVDKTEAVGLIAVPGENLDELLLTSEDCAFLSEVGIRS |
Ga0209526_101572062 | 3300028047 | Forest Soil | MTFDELWRLNLDPDGAFVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP |
Ga0137415_100890873 | 3300028536 | Vadose Zone Soil | MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLLDVGIRP |
Ga0137415_106873152 | 3300028536 | Vadose Zone Soil | MTFDELWRVNLDQERARRDSVEKAEAVGLLEVPGENANELLLTAEDCGFLLEVGIRP |
Ga0222749_107730781 | 3300029636 | Soil | MTFDELWRLNLEPEGACVDSVDNDEAVGLIAPLVENPNELQLTAEDCVFLSDVGIRL |
Ga0170834_1086531232 | 3300031057 | Forest Soil | NLDRDGARADSVVKAEVVGLVAAPGENPNELLLTSDDCVFLLEVGINP |
Ga0307476_107568782 | 3300031715 | Hardwood Forest Soil | MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIRA |
Ga0307477_108030052 | 3300031753 | Hardwood Forest Soil | MNFAELWRLNLDRNRAPVDSVDQTEAVGVLVAPAANPNALPLTAEDCMLEVGIRP |
Ga0307475_1000602110 | 3300031754 | Hardwood Forest Soil | MTFDELWRANLDQERSCGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALAIKA |
Ga0307475_100254823 | 3300031754 | Hardwood Forest Soil | MNFDELWRLNLDRDRAHVDSVAKTEAVGVLVAPAANPNELLLTAGDCMFLLEVGIRP |
Ga0307479_102084083 | 3300031962 | Hardwood Forest Soil | MTFDELWRLDFDRKRVGVDSDNKAKALGLMGVLGENPNELLLTAEDCVFLLEVGIRP |
Ga0307479_104861052 | 3300031962 | Hardwood Forest Soil | MTFDDLWRLDFDRKRVGVDSDNKAKALGLVAVLGENLNELLLSAEDCVFLLEVGIRP |
Ga0307479_113162822 | 3300031962 | Hardwood Forest Soil | MNFDELWRLNLDRDRAHVDSVDKTEAVGVFVPPAANPNELLLTAGDCMFLLDVGIRP |
Ga0307479_113219172 | 3300031962 | Hardwood Forest Soil | MTFDELWRLNLVLERPRVDSVDQAETAGPPAVRDGNANEPLLTAEDCVFLLEVGIKPWKSTCAVRK |
Ga0307471_1006682932 | 3300032180 | Hardwood Forest Soil | MTFDELWRLDFDQKHVGVDSDNTAKALGLIAVLGENPNELLLTAEDCVFLQEVRIRL |
⦗Top⦘ |