Metagenome / Metatranscriptome Family F094341

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094341
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	57 residues
Representative Sequence	MTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP
Number of Associated Samples	67
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.96 %
% of genes near scaffold ends (potentially truncated)	12.26 %
% of genes from short scaffolds (< 2000 bps)	69.81 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.679 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (44.340 % of family members)
Environment Ontology (ENVO)	Unclassified (42.453 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.18% β-sheet: 0.00% Coil/Unstructured: 78.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07366	SnoaL	21.70
PF02321	OEP	9.43
PF08308	PEGA	6.60
PF08281	Sigma70_r4_2	4.72
PF12680	SnoaL_2	4.72
PF05199	GMC_oxred_C	4.72
PF12833	HTH_18	2.83
PF01244	Peptidase_M19	0.94
PF04073	tRNA_edit	0.94
PF07883	Cupin_2	0.94
PF02518	HATPase_c	0.94
PF13181	TPR_8	0.94
PF01593	Amino_oxidase	0.94
PF02754	CCG	0.94
PF01042	Ribonuc_L-PSP	0.94
PF00732	GMC_oxred_N	0.94
PF00491	Arginase	0.94
PF03551	PadR	0.94
PF13847	Methyltransf_31	0.94
PF13561	adh_short_C2	0.94
PF00106	adh_short	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	18.87
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	5.66
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.94
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	0.94
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.94
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.94
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.94
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	0.94
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.94

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.68 %
Unclassified	root	N/A	11.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.68 %
Unclassified	root	N/A	11.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.68 %
Unclassified	root	N/A	11.32 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.34 %
Unclassified	root	N/A	11.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.36 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.09 %
Unclassified	root	N/A	11.32 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.55 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.36 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.15 %
Unclassified	root	N/A	11.32 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7.55 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.94 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.94 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.36 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.15 %
Unclassified	root	N/A	11.32 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	7.55 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.94 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.94 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.36 %
Unclassified	root	N/A	11.32 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	7.55 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	6.60 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.94 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.36 %
Unclassified	root	N/A	11.32 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	7.55 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3.77 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.83 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.36 %
Unclassified	root	N/A	11.32 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	7.55 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3.77 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.83 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.94 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.36 %
Unclassified	root	N/A	11.32 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	7.55 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3.77 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.83 %
Ktedonobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp.	0.94 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10323130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300002906\|JGI25614J43888_10003242	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	5109	Open in IMG/M
3300002907\|JGI25613J43889_10176221	Not Available	566	Open in IMG/M
3300002917\|JGI25616J43925_10042982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1975	Open in IMG/M
3300005712\|Ga0070764_10730384	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300006172\|Ga0075018_10256033	Not Available	849	Open in IMG/M
3300006176\|Ga0070765_100474966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1173	Open in IMG/M
3300006893\|Ga0073928_10003818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	23151	Open in IMG/M
3300007258\|Ga0099793_10058793	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300007258\|Ga0099793_10362649	Not Available	709	Open in IMG/M
3300010403\|Ga0134123_12443893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp.	588	Open in IMG/M
3300011269\|Ga0137392_10287918	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1357	Open in IMG/M
3300011269\|Ga0137392_10903286	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300012202\|Ga0137363_10004200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	8822	Open in IMG/M
3300012202\|Ga0137363_10067346	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2623	Open in IMG/M
3300012202\|Ga0137363_10352725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1218	Open in IMG/M
3300012202\|Ga0137363_10776319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	812	Open in IMG/M
3300012203\|Ga0137399_10131042	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300012203\|Ga0137399_10475679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1046	Open in IMG/M
3300012203\|Ga0137399_11069292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	679	Open in IMG/M
3300012203\|Ga0137399_11346595	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300012203\|Ga0137399_11574634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300012205\|Ga0137362_10002422	All Organisms → cellular organisms → Bacteria	12102	Open in IMG/M
3300012205\|Ga0137362_11103959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300012582\|Ga0137358_10024536	All Organisms → cellular organisms → Bacteria	3908	Open in IMG/M
3300012582\|Ga0137358_10084232	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300012582\|Ga0137358_10106230	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300012582\|Ga0137358_10290406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1111	Open in IMG/M
3300012582\|Ga0137358_10480581	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300012683\|Ga0137398_10376414	Not Available	964	Open in IMG/M
3300012683\|Ga0137398_10639013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	737	Open in IMG/M
3300012683\|Ga0137398_10758405	Not Available	676	Open in IMG/M
3300012685\|Ga0137397_10057496	All Organisms → cellular organisms → Bacteria	2801	Open in IMG/M
3300012918\|Ga0137396_10076492	All Organisms → cellular organisms → Bacteria	2349	Open in IMG/M
3300012918\|Ga0137396_10871174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300012922\|Ga0137394_10123483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2193	Open in IMG/M
3300012923\|Ga0137359_10066077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3157	Open in IMG/M
3300012923\|Ga0137359_10408049	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300012925\|Ga0137419_11703058	Not Available	538	Open in IMG/M
3300012927\|Ga0137416_10121792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1998	Open in IMG/M
3300012927\|Ga0137416_10313701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1304	Open in IMG/M
3300012927\|Ga0137416_12138162	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300012944\|Ga0137410_10710657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	838	Open in IMG/M
3300013306\|Ga0163162_11103390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300020140\|Ga0179590_1111044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300020199\|Ga0179592_10059705	All Organisms → cellular organisms → Bacteria	1740	Open in IMG/M
3300020199\|Ga0179592_10517977	Not Available	509	Open in IMG/M
3300020579\|Ga0210407_10038508	All Organisms → cellular organisms → Bacteria	3558	Open in IMG/M
3300020579\|Ga0210407_10244286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1398	Open in IMG/M
3300020580\|Ga0210403_10293470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1332	Open in IMG/M
3300020580\|Ga0210403_10326579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1256	Open in IMG/M
3300020581\|Ga0210399_10254870	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300021046\|Ga0215015_10386785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	976	Open in IMG/M
3300021088\|Ga0210404_10000117	All Organisms → cellular organisms → Bacteria	53863	Open in IMG/M
3300021088\|Ga0210404_10014120	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300021088\|Ga0210404_10457056	Not Available	718	Open in IMG/M
3300021168\|Ga0210406_10149033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1964	Open in IMG/M
3300021170\|Ga0210400_10120806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2091	Open in IMG/M
3300021170\|Ga0210400_10323549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300021171\|Ga0210405_10034959	All Organisms → cellular organisms → Bacteria	4014	Open in IMG/M
3300021407\|Ga0210383_10624319	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	928	Open in IMG/M
3300021432\|Ga0210384_10068916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3187	Open in IMG/M
3300021479\|Ga0210410_11335144	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300021559\|Ga0210409_10074086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3162	Open in IMG/M
3300022557\|Ga0212123_10003608	All Organisms → cellular organisms → Bacteria	31930	Open in IMG/M
3300024288\|Ga0179589_10548967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300024330\|Ga0137417_1021216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300024347\|Ga0179591_1046321	All Organisms → cellular organisms → Bacteria	3213	Open in IMG/M
3300026285\|Ga0209438_1132340	Not Available	671	Open in IMG/M
3300026304\|Ga0209240_1000252	All Organisms → cellular organisms → Bacteria	22056	Open in IMG/M
3300026320\|Ga0209131_1017898	All Organisms → cellular organisms → Bacteria → Proteobacteria	4295	Open in IMG/M
3300026320\|Ga0209131_1022814	All Organisms → cellular organisms → Bacteria	3740	Open in IMG/M
3300026320\|Ga0209131_1096338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1567	Open in IMG/M
3300026374\|Ga0257146_1017901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1153	Open in IMG/M
3300026469\|Ga0257169_1003660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1605	Open in IMG/M
3300026475\|Ga0257147_1002569	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300026490\|Ga0257153_1001156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4806	Open in IMG/M
3300026490\|Ga0257153_1018463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1422	Open in IMG/M
3300026490\|Ga0257153_1043063	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300026496\|Ga0257157_1001942	All Organisms → cellular organisms → Bacteria	2915	Open in IMG/M
3300026507\|Ga0257165_1039532	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300026514\|Ga0257168_1034830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1085	Open in IMG/M
3300026514\|Ga0257168_1074731	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300026514\|Ga0257168_1135629	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300026551\|Ga0209648_10001289	All Organisms → cellular organisms → Bacteria	20057	Open in IMG/M
3300026551\|Ga0209648_10181943	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1625	Open in IMG/M
3300026555\|Ga0179593_1018340	All Organisms → cellular organisms → Bacteria	2134	Open in IMG/M
3300027643\|Ga0209076_1120376	Not Available	741	Open in IMG/M
3300027651\|Ga0209217_1003695	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5096	Open in IMG/M
3300027671\|Ga0209588_1196260	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300027903\|Ga0209488_10245922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1341	Open in IMG/M
3300027903\|Ga0209488_10699422	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	726	Open in IMG/M
3300028047\|Ga0209526_10157206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1590	Open in IMG/M
3300028536\|Ga0137415_10089087	All Organisms → cellular organisms → Bacteria	2942	Open in IMG/M
3300028536\|Ga0137415_10687315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	836	Open in IMG/M
3300029636\|Ga0222749_10773078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300031057\|Ga0170834_108653123	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	897	Open in IMG/M
3300031715\|Ga0307476_10756878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	719	Open in IMG/M
3300031753\|Ga0307477_10803005	Not Available	625	Open in IMG/M
3300031754\|Ga0307475_10006021	All Organisms → cellular organisms → Bacteria	7676	Open in IMG/M
3300031754\|Ga0307475_10025482	All Organisms → cellular organisms → Bacteria	4219	Open in IMG/M
3300031962\|Ga0307479_10208408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1925	Open in IMG/M
3300031962\|Ga0307479_10486105	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300031962\|Ga0307479_11316282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300031962\|Ga0307479_11321917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300032180\|Ga0307471_100668293	Not Available	1202	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.23%
Aquatic	Environmental → Aquatic	2.83%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.23%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.51%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.72%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	44.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103231302	3300001661	Forest Soil	MTFDELWRLNLDPDGACVDSVDNDEAVGLIAPPGENPNELQLSAEDCLFLLDVGIRP*
JGI25614J43888_100032423	3300002906	Grasslands Soil	MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP*
JGI25613J43889_101762211	3300002907	Grasslands Soil	MTFDELWRLNLDRDEARVDSVDKAEEVGLITVPGENPNALQLTPEDCVFLLEMGIRP*
JGI25616J43925_100429822	3300002917	Grasslands Soil	MTFDELWRVNLDQERARGDSVEKAEAVGLLAVPGENANELLLTAEDCVFLSALGIRA*
Ga0070764_107303842	3300005712	Soil	MTFDELWRANLDQERACGDSAEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA*
Ga0075018_102560332	3300006172	Watersheds	MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSTLGIKA*
Ga0070765_1004749662	3300006176	Soil	MNFDELWRVNLDQQRARGDSVKKTEAVGLLAVPGENANELLLTAEDCVFLSALEIRA*
Ga0073928_100038188	3300006893	Iron-Sulfur Acid Spring	MTFDELWRLNLDRGDARADSVVKAEVVGLVAAPGENPNELLLTSDDCVFLLEVGINP*
Ga0099793_100587932	3300007258	Vadose Zone Soil	MPYRRRKPMTFDELWRLDLDGDGARGDSVDKAEAVGLIAVQGENPNELLLTAGDGVFLSEVGIRP*
Ga0099793_103626491	3300007258	Vadose Zone Soil	VTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCVFLLEVGIRP*
Ga0134123_124438932	3300010403	Terrestrial Soil	FAMPCGRREPMTFDELWRVNLDQERARGDSVEKAGAVGLLAVPGENANELLLTAEDCEFLSALGIRA*
Ga0137392_102879182	3300011269	Vadose Zone Soil	VKEKPMTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP*
Ga0137392_109032862	3300011269	Vadose Zone Soil	MTFDELWRLNLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA*
Ga0137363_100042009	3300012202	Vadose Zone Soil	MTFDELWRLNLHRDCARADSVDKAEAVGLLAVVGENANELQMTAEDCVFLFEVGIRP*
Ga0137363_100673463	3300012202	Vadose Zone Soil	MTFDELWRLDFDRKRVGVDSDNKAKALGLIAVLGENPNELLLTAEDCVFLLEVGIRP*
Ga0137363_103527252	3300012202	Vadose Zone Soil	MTFDELWRLNLVRERPRVDSVDQAETAGPLAVRDGNANEPLLTAEDCVFLLEVGIKPWKSTCAVRK*
Ga0137363_107763192	3300012202	Vadose Zone Soil	MTFDELWRVNLDQERARGDSVEKAEALGLLAVPGENANELLLTAEDCVFLSALGIRA*
Ga0137399_101310421	3300012203	Vadose Zone Soil	PSSQWFFVMPYRRRKPMTFDELWRLDLDGDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP*
Ga0137399_104756792	3300012203	Vadose Zone Soil	MTFDELWRVNLDQERARGDSVEKAEAVGLLAVPGENANELLLTAEDCVFLS
Ga0137399_110692922	3300012203	Vadose Zone Soil	PMTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCGFLLEVGIRP*
Ga0137399_113465951	3300012203	Vadose Zone Soil	ELWRLELDRARARLDSVNKTEAVGLIAVPGQTLNELLLTADDCVFLSVVGIRP*
Ga0137399_115746342	3300012203	Vadose Zone Soil	VKEKPMTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP*
Ga0137362_100024224	3300012205	Vadose Zone Soil	MTFDELWRLDFDRKRVGVDSDNKAKALGLIAVLGENPNELLLTAEDCVFLLEVEIRP*
Ga0137362_111039591	3300012205	Vadose Zone Soil	LDLDRERARADSVDKTEAVGLIAVGGQNPNELLLTAEDCVFLLKVGISA*
Ga0137358_100245365	3300012582	Vadose Zone Soil	MTFDELWRVNLDQERARRDSVEKAEAVGLLEVPGENANELLLTAEACVLLSALGIRA*
Ga0137358_100842322	3300012582	Vadose Zone Soil	MPYSRRKSMTFDELWRLNLDRDEARVDSVDSAEAVGLIAVPGDNPNALQLTPEDCVFLLEMGIRP*
Ga0137358_101062303	3300012582	Vadose Zone Soil	MNFDELWRLNLDRDRALVDSVDKTEAVGVLVAPAANPNELLLTAGDCMFLLDVGIRP*
Ga0137358_102904062	3300012582	Vadose Zone Soil	MTFDELWRLDFDRKRVGVDSSNKAKALGLIAVLGENPNELLLTAEDCVFLLEVGIRP*
Ga0137358_104805812	3300012582	Vadose Zone Soil	MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTSEDCVCLSHVGIRP*
Ga0137398_103764141	3300012683	Vadose Zone Soil	MTFDEMWRLDFDQKHVGVDSDNTAKALGLIAVLGENPNELLLTAEDCVFLQEVGIRP*
Ga0137398_106390132	3300012683	Vadose Zone Soil	MTFDELWRVNLDQERVRGDSVEKAEALGLLAVPGENANELLLTAEDCVFLSALGIRA*
Ga0137398_107584052	3300012683	Vadose Zone Soil	MNFDELWRLNLDRDRAHVDSVDQTEVVGVVVAPAANPNELLLTAGDCMFLLDVGIRP*
Ga0137397_100574961	3300012685	Vadose Zone Soil	MTFDELWRLNLDGERAGGDAVDKEEAAALIVDPGQNPNEFLLTAEDCVFLLEVGIRP*
Ga0137396_100764923	3300012918	Vadose Zone Soil	MPYRRRKPMTFDELWRLDLDGDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP*
Ga0137396_108711742	3300012918	Vadose Zone Soil	MKEKPMTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP*
Ga0137394_101234833	3300012922	Vadose Zone Soil	DELWRLELDRARARLDSVNKTEAVGLIAVPGQTLNELLLTADDCVFLSVVGIRP*
Ga0137359_100660777	3300012923	Vadose Zone Soil	MNFDELWRLNLDRDRAHVDSVDQTEVVGVLVAPAANPNELLLTAGDCMFLLDVGIRP*
Ga0137359_104080492	3300012923	Vadose Zone Soil	MPYRRRKSMTFDELWRLNLDRDEARVDSVDKAEEVGLITVPGENPNALQLTPEDCVFLLEMGIRP*
Ga0137419_117030581	3300012925	Vadose Zone Soil	MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCGFLLEVGIRP*
Ga0137416_101217922	3300012927	Vadose Zone Soil	VKEKPMTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLLDVGIRP*
Ga0137416_103137012	3300012927	Vadose Zone Soil	MTFDELWRLNLDPDGACVDSVDNDEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP*
Ga0137416_121381622	3300012927	Vadose Zone Soil	MTFDELWRLDLERERARADSVDKTEAVGLIAVRGQDPKELLLTAEDCGFLLEVGIRP*
Ga0137410_107106571	3300012944	Vadose Zone Soil	RLELDRARARLDSVNKTEAVGLIAVPGQTLNELLLTADDCVFLSVVGIRP*
Ga0163162_111033901	3300013306	Switchgrass Rhizosphere	MTFDELWRVNLDQERARGDSVEKAGAVGLLAVPGENANELLLTAEDCEFLSALGIRA*
Ga0179590_11110442	3300020140	Vadose Zone Soil	MTFDELWRVNLDQERARRDSVEKAEAVGLLAVPGENANELLLTAEDCVFLSALGIRA
Ga0179592_100597052	3300020199	Vadose Zone Soil	MTFDELWRVNLDQERARRDSVEKAEAVGLLEVPGENANELLLTAEDCVFLSALGIRA
Ga0179592_105179772	3300020199	Vadose Zone Soil	MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCVFLLEVGIRP
Ga0210407_100385081	3300020579	Soil	MTFDEVWRLDFDQKHIGVDLDNTAKALGLIAVLGENPNELLLTAEDCVFLPEVGIRP
Ga0210407_102442862	3300020579	Soil	MTFDELWRLILDPDSACVDSVDKDEAVGLIAPSAEKPNELQLTTEDCVFLLDVGIRL
Ga0210403_102934703	3300020580	Soil	MTFDELWRLNLDPEGACVDSVDNDEAVGLIAPPVENPNELQLTAEDCVFLSDVGIRL
Ga0210403_103265793	3300020580	Soil	MTFDELWRLNLDPDSACVDSVDKDEAVGLIAPSAEKPNELQLTTEDCVFLLDVGIRL
Ga0210399_102548703	3300020581	Soil	MTFDELWRVNLDQERARGDSVEKAEAIGLRAVSSDNANELLLTAEDCVFLSALGIKA
Ga0215015_103867852	3300021046	Soil	MNFDELWRVNLDQQRARGDSVEKTEAVGLLAVPGENANELLLTAEDCVFLAALGIRA
Ga0210404_100001176	3300021088	Soil	MTFDELWRLNLDRDGAAGDSVDKAETVGLLAVLGENPNEQLLTADDCVCFC
Ga0210404_100141204	3300021088	Soil	MTFDELWRLNLDPDGACVDSVDNDEAVGLIAPPGENPNELQLSAEDCLFLLDVGIRP
Ga0210404_104570561	3300021088	Soil	MTFDELWRLNLDRERAGGDTVDKEEAVALIVDPGQNPNEFLLTAEDCVFLLEVGIRP
Ga0210406_101490333	3300021168	Soil	MTFDELWRVNLDQERARGDSVEKAEAIGLRAVSSDNANELLLTAEDCVFLSALG
Ga0210400_101208063	3300021170	Soil	MTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP
Ga0210400_103235492	3300021170	Soil	MTFDELWRLNLDRERVGGDTVDKEEAVALIVDPGQNPNEFLLTAEDCVFLLEVGIRP
Ga0210405_100349594	3300021171	Soil	MTFDELWRANLDQERACGDSVEKAGAIGLRPVPGENANELLLTAEDW
Ga0210383_106243192	3300021407	Soil	MTFDELWRANLDQERACGDSAEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA
Ga0210384_100689163	3300021432	Soil	MTFDELWRVNLDQERARGDSVEKAEAIDLRAVSSDNANELLLTVEDW
Ga0210410_113351442	3300021479	Soil	MTFDELWRVNLDQERARGDSVEKAEAIGLRAVSSDNASELLLTAEDW
Ga0210409_100740862	3300021559	Soil	MNFDELWRVNLDQQRARGDSVKKTEAVGLLAVPGENANELLLTAEDCVFLSALEIRA
Ga0212123_1000360835	3300022557	Iron-Sulfur Acid Spring	MTFDELWRLNLDRGDARADSVVKAEVVGLVAAPGENPNELLLTSDDCVFLLEVGINP
Ga0179589_105489671	3300024288	Vadose Zone Soil	MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQNPKELLLTAEDCVFLLEVGIRP
Ga0137417_10212162	3300024330	Vadose Zone Soil	MTFDELWRLNLDPDGACVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGISP
Ga0179591_10463213	3300024347	Vadose Zone Soil	MTFDELWRLNLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA
Ga0209438_11323401	3300026285	Grasslands Soil	MTFDELWRLNLDRDGARVASVDKADAVGLIAVPGENPNELLLTAVDCVFLSEVGIRP
Ga0209240_100025218	3300026304	Grasslands Soil	MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP
Ga0209131_10178984	3300026320	Grasslands Soil	MTFDELWRLNLDREEASVDSVDKAEAVGRIAVPGENPNAQQLTAEDCVFLFEMGIRP
Ga0209131_10228143	3300026320	Grasslands Soil	MTFDELWRLNLDRDEARVDSVDKAEEVGLITVPGENPNALQLTPEDCVFLLEMGIRP
Ga0209131_10963382	3300026320	Grasslands Soil	MTFDELWRVNLDQERVRGDSVEKAEALGLLAVPGENANELLLTAEDCVFLSALGIRA
Ga0257146_10179011	3300026374	Soil	MTFDELWRLNLDRDSASADSVDKAEAVGVLAVLGENPNELRITADDWAFLFEVGIRP
Ga0257169_10036603	3300026469	Soil	MTFDELWRLDFDRKRVGVDSDNKAKALGLIAVLGENPNELLLTAEDCVFLLEVGIRP
Ga0257147_10025693	3300026475	Soil	MTFDELWRLNLDRDSAGADSVDKAEAVGVLAVLGENPNELRLTADDCAFLFEVGIRP
Ga0257153_10011562	3300026490	Soil	MTFDELWRLDLDRERARADSVDRTEAVGLIAVRGQDPKELLLTAEDCMFLLEVGIRP
Ga0257153_10184632	3300026490	Soil	VELDFDQKHVGVDSDNTAKALGLIAVPGENPNELLLTAEDCVFLQEVGIRYTRAVSPAG
Ga0257153_10430632	3300026490	Soil	MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSAPGIKA
Ga0257157_10019422	3300026496	Soil	MTFDELWRLDLDGDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP
Ga0257165_10395321	3300026507	Soil	MTFDELWRLNLDRDSAGVDSVDKAEAVGVLAVLGENPNELRLTADDCAFLFEVGIRP
Ga0257168_10348302	3300026514	Soil	RKPTTFDELWRLDLDRDGARGDSVDKAEAVGLIAVPGENPNELLLTAGDGVFLSEVGIRP
Ga0257168_10747311	3300026514	Soil	MNFDELWRLNLDRDRAHVDSVDKTEVVGVLVAPAASPNELLLTAGDCMFLLDVGIRP
Ga0257168_11356292	3300026514	Soil	TPSSTRKPMTFDELWRLDLDRERARVDSVDKTEAVGLIAVRGQNPNELLLTAEDGVFLVEVGIRP
Ga0209648_1000128920	3300026551	Grasslands Soil	MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIKA
Ga0209648_101819432	3300026551	Grasslands Soil	MTFDELWRLNLHRDCARADSVDKAEAVALFAVVGENANELQMTAEDCVFLFEVGIRP
Ga0179593_10183401	3300026555	Vadose Zone Soil	MTFDELWRVNLGQERARRDSVEKAEAVGLLEVPGENANELLLTAEDCVFLSALGIRA
Ga0209076_11203761	3300027643	Vadose Zone Soil	MTFDELWRLDLDGDGARGDSVDKAEAVGLIAVQGENPNELLLTAGDGVFLSEVGIRP
Ga0209217_100369510	3300027651	Forest Soil	MTFDELWRLNLDRDDTCVDSADKTEAVGLIAVPSENPNELLLTAEDCVFLSEVGIRP
Ga0209588_11962602	3300027671	Vadose Zone Soil	VLSGSEKPMTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLSDVGIRP
Ga0209488_102459222	3300027903	Vadose Zone Soil	MTFDEMWRLDFDQKHVGVDSDNTAKALGLIAVLGENPNELLLTAEDCVFLQEVGIRP
Ga0209488_106994221	3300027903	Vadose Zone Soil	MTFDELWRLDLDRERARADSVDKTEAVGLIAVPGENLDELLLTSEDCAFLSEVGIRS
Ga0209526_101572062	3300028047	Forest Soil	MTFDELWRLNLDPDGAFVDSVDKNEAVGLIAPPGENPNELQLTAEDCVFLLDVGIRP
Ga0137415_100890873	3300028536	Vadose Zone Soil	MTFDELWRLNLDPDGTCVDSVDKNEAVGLIAPPAENPNELLLTAEDCVFLLDVGIRP
Ga0137415_106873152	3300028536	Vadose Zone Soil	MTFDELWRVNLDQERARRDSVEKAEAVGLLEVPGENANELLLTAEDCGFLLEVGIRP
Ga0222749_107730781	3300029636	Soil	MTFDELWRLNLEPEGACVDSVDNDEAVGLIAPLVENPNELQLTAEDCVFLSDVGIRL
Ga0170834_1086531232	3300031057	Forest Soil	NLDRDGARADSVVKAEVVGLVAAPGENPNELLLTSDDCVFLLEVGINP
Ga0307476_107568782	3300031715	Hardwood Forest Soil	MTFDELWRANLDQERACGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALGIRA
Ga0307477_108030052	3300031753	Hardwood Forest Soil	MNFAELWRLNLDRNRAPVDSVDQTEAVGVLVAPAANPNALPLTAEDCMLEVGIRP
Ga0307475_1000602110	3300031754	Hardwood Forest Soil	MTFDELWRANLDQERSCGDSVEKAEAIGLRAVPGENANELLLTAEDCVFLSALAIKA
Ga0307475_100254823	3300031754	Hardwood Forest Soil	MNFDELWRLNLDRDRAHVDSVAKTEAVGVLVAPAANPNELLLTAGDCMFLLEVGIRP
Ga0307479_102084083	3300031962	Hardwood Forest Soil	MTFDELWRLDFDRKRVGVDSDNKAKALGLMGVLGENPNELLLTAEDCVFLLEVGIRP
Ga0307479_104861052	3300031962	Hardwood Forest Soil	MTFDDLWRLDFDRKRVGVDSDNKAKALGLVAVLGENLNELLLSAEDCVFLLEVGIRP
Ga0307479_113162822	3300031962	Hardwood Forest Soil	MNFDELWRLNLDRDRAHVDSVDKTEAVGVFVPPAANPNELLLTAGDCMFLLDVGIRP
Ga0307479_113219172	3300031962	Hardwood Forest Soil	MTFDELWRLNLVLERPRVDSVDQAETAGPPAVRDGNANEPLLTAEDCVFLLEVGIKPWKSTCAVRK
Ga0307471_1006682932	3300032180	Hardwood Forest Soil	MTFDELWRLDFDQKHVGVDSDNTAKALGLIAVLGENPNELLLTAEDCVFLQEVRIRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094341

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences