NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000100

Scaffold Ga0210404_10000100


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000100 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60873
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F000522Metagenome / Metatranscriptome1055Y
F000822Metagenome / Metatranscriptome876Y
F001511Metagenome / Metatranscriptome680Y
F001701Metagenome / Metatranscriptome649Y
F004291Metagenome / Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000010016F000522GAGMDHHEAVRKFEHLMLKEADHAREVATELEALVPILTTENSRQLAQLQIKASHRQAKEFRELAEKVKEK
Ga0210404_1000010028F001511AGGAGGMEFVMFEDVDGMEVFVNPEQVIWVREYPGEITVISCGHDDKFNVRLSPAQTVAALGKAVR
Ga0210404_1000010031F004291AGGAGGMNMKRVALLVLLGSMVVLPVAEAQVKHIEMRVEGMT
Ga0210404_1000010032F000092GAGVKQHLGRQSGVQNVEVSLRDGRVGVTPKEDGQIDPVQLLKATYDSGVTAAEMDMTARGKIVKDSSGNLALQVEPNRSFALAPNELSKGLEALAGTQTMVTVRGQLYKKPTGKKKADLSAPLKLEILEVQKKE
Ga0210404_1000010040F001701GGGGGMNSASSIKFLYAAYIATWLIHALYLGSLLRRYSRLRQQMKDVGK
Ga0210404_1000010063F000822GAGGMFMNRSAIYCAAGILAVAAAAFAQNPKVFHGEISDSQCAMNVHSLTRSHQEMLKSKSMGGTANTCSMYCIEHLGGYLVLSSGNDVLRLDRADLVHGFEGQKVKLTGVLDAKAKQIHVLKIELESQK
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