Scaffold Ga0210404_10000035

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000035
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 166896
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 116 (85.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003278	Metagenome / Metatranscriptome	496	Y
F004875	Metagenome / Metatranscriptome	420	Y
F005567	Metagenome / Metatranscriptome	396	Y
F007543	Metagenome / Metatranscriptome	349	Y
F016191	Metagenome / Metatranscriptome	249	Y
F026939	Metagenome / Metatranscriptome	196	Y
F081559	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000003541	F007543	AGGAG	MDSNYVFLCGVMWCKFGQKDAGRELLRAAGSGDPDMKALAWAMFAKGVRRLKELEKRMQPSSRAILGEGLCG
Ga0210404_1000003542	F026939	GGAGG	MTPQTSQTDTSLQAELDRLTYSAYLLTLDPGKAFSAVERAIDGSLEEPAVDSDLLERTVELALEDVLCESRTSWDGESSAYDVVLYGHFQAINSKAFQSLQDLNGSPMLLLDSTSRVAFVLHHLLGYKIGDAAAKARLTEKQYRAQLRRAYVQLASFRLQDGTAASHDVEQSAPTWERKYELVEMDSCLLV
Ga0210404_1000003553	F016191	GGA	MKRIASLSILFAALIEFAIERARFDLWIVAVVAIVTLLWNVVGPALRSHMDSPKHDNNEPVSKG
Ga0210404_1000003561	F004875	GAGG	MTRTFSTFVLAILRAGALGCVVLLFSGLGLAQKVVTARATIPFDFWAEGHQFQAGDYVFDNEVPGSASIHREGTNSGIGVSIILYAIPEEKENPRAIFVLRDGKYFLFELWSVQGRYVVTAEFEHRGEASEQQRQVPLTIVESHDE
Ga0210404_1000003563	F081559	GAG	MLTNQEPDWNIDDLTDTEIYAAIHYLEPDPRTEDEQDANDQHKDNGVVICACLYILLLGCLGFVWFYWR
Ga0210404_1000003566	F003278	GGAG	VKISLVDNARQRRVIVEGKLIAPWTAELRNACQEARADLRGRELVVEMKHISTISQEGENVILELINGGIRFRCHGVFTKHVVKELTRRASRNPGIRARD
Ga0210404_1000003572	F005567	AGGAGG	MCPFCLATMGLVVAGAVSTGGLAALAVKVSRKNRTGEVLPNSDERKNQNVDQND