Basic Information | |
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Taxon OID | 3300021087 Open in IMG/M |
Scaffold ID | Ga0206683_10010509 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5727 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (31.58%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 80 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013467 | Metagenome | 271 | Y |
F036024 | Metagenome / Metatranscriptome | 171 | Y |
F066274 | Metagenome / Metatranscriptome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206683_1001050916 | F036024 | N/A | MTTEYTMGRIGNEDTFLKLDKATQICQAKIAEYISEVKLEDGEEAIDDYAWHIVTPEKFEQDWENDEKLKKTAEIKTKYKNLAKNNRVLFLEVDWN |
Ga0206683_100105097 | F013467 | GAG | MTVGLLKNWVWCEDCLEWKDAGDEVSFVNIEEDSFGKDLMTFDCDKCENTNKNNIISSPTKPKGA |
Ga0206683_100105099 | F066274 | N/A | MILELTSDEIGWVKYALIRSSATLNGRDKDMTLKEERKLLRIVQKIEEQEK |
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