NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206683_10010509

Scaffold Ga0206683_10010509


Overview

Basic Information
Taxon OID3300021087 Open in IMG/M
Scaffold IDGa0206683_10010509 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5727
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F036024Metagenome / Metatranscriptome171Y
F066274Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0206683_1001050916F036024N/AMTTEYTMGRIGNEDTFLKLDKATQICQAKIAEYISEVKLEDGEEAIDDYAWHIVTPEKFEQDWENDEKLKKTAEIKTKYKNLAKNNRVLFLEVDWN
Ga0206683_100105097F013467GAGMTVGLLKNWVWCEDCLEWKDAGDEVSFVNIEEDSFGKDLMTFDCDKCENTNKNNIISSPTKPKGA
Ga0206683_100105099F066274N/AMILELTSDEIGWVKYALIRSSATLNGRDKDMTLKEERKLLRIVQKIEEQEK

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