Scaffold Ga0206677_10032330

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10032330
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2922
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033501	Metagenome / Metatranscriptome	177	Y
F033962	Metagenome / Metatranscriptome	176	N
F067130	Metagenome / Metatranscriptome	126	N
F070137	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1003233010	F033962	N/A	MTMNELKEYVANQKRIKVAQWNKQREGNYCQSFTQKEFEQSMEVDRIKTRTRRTHSKGNLWNYYHTKDRELFTK
Ga0206677_100323302	F033501	N/A	MNAIEFVNEMNRLAEVHFGEFGYDTCSEDEKKAVIKLLLNNLNK
Ga0206677_100323306	F067130	N/A	MQVEIDTTNLQNTLEQLYDRKIKLIAYASADNIDTLVLEGHEEDLFTFYFECFNPFNEWTDADVVRSEFHAHVLTK
Ga0206677_100323307	F070137	N/A	MDLHLALENKHLRDLHENFRDEIWVEFHASMINNQDDFYDYFHHWIDNAVIYTRDCEAILEGNSEYHYLEHDVYGRPDNIAQAAYACLYDYIMDHNDTPNWEEMENVLDKA