Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10000057 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10000057 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	91045
Total Scaffold Genes	143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	104 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

91045

Total Scaffold Genes

143 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

104 (72.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F040347	Metagenome / Metatranscriptome	162	N
F042025	Metagenome / Metatranscriptome	159	Y
F090892	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_10000057109	F040347	GGAG	MKNRWDVTVETSNYDFNPFRESDHGSGFRTVANIYEDWTEEVKTARSKEYDFYWPSPVAPDGDHFSYDYEELLCKDWGIPEDHVIYRQWTTDETTPILNSLADKVGLADAQINIQTQYTGMMLHLHIDSLTGLRKERSDNAASRATDVEWGRVFVMLDEWAPGHIIQFGNTYVHPWKKGDVIWFDWSNIPHSTVNTGPWPRSLAKVTGKVTEKYKEFVQASL
Ga0206677_10000057126	F042025	N/A	MDRNLIQKMHVSILFPYRNNAYSPNDDLALMEDIMQNGIVDPIILGVGVWSRKVRLDTGNHRIYLAPKLGITHLPVIARVHNYCTFEPGNGDHSYDCPYITPKKEWLDTDYYAKPSDVLDIMEILKGMEIG
Ga0206677_1000005743	F009293	GGAG	MTRIALDTNAAQEFTVHVFDANDINSITQSDEIYKCFESGWPVVIKNLTIPNLDYDYYDNLPDWTIKDNKWIMPWYNSHIKKRDRLREERGWSEDKIDKFHKKHKQSNNGWNEIFDMIFPKYNTSERMLSHRYNTLVENKLHLDELDEQHTGAEQQIRMFVNLDKKRPRVLTFGPDLEQMWYKYKDEFNLQELDKNNIHTFITEMRNRCVWNDKMWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADIMDSSLIYPDLCMKERIANLK
Ga0206677_1000005757	F090892	AGGAG	MVDSYLTPKLKEGEQVDLSLYSPRQRTNIRLYGLDFKDVLPVDIFEYKTKWKSTATKVDIRGKYTEAQKWCKTHCFHQDFEIQKYANPDDSHAVYFKNPEEAMLFKLSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10000057

Overview

Ecosystem & Geography

Associated Families

Sequences