Scaffold Ga0206677_10000015

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000015
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141289
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 139 (74.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F023957	Metagenome / Metatranscriptome	208	Y
F029484	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000001568	F010848	AGGAG	MAQADRRSAAAGEFIGKDVFLKSFQQQSGNISATQLTALVSSVQNLNLSVLKVGAVSGDTVKMIVEGADNLANGDIAAHVIADVSF
Ga0206677_1000001569	F029484	AGGAG	MAQANPNAAVRAANGLVGTTHIMSVTDVSTNSVADVTAEAQAEGFIVVAIEDDVANDGCHIALQGAGATPSLTGATLVVTFG
Ga0206677_1000001597	F023957	AGGAG	LSNKTPYEIRLELLQEARLILQAKAKQPEQMPSTEEIVAEAEKLNEFISSKPSR