Scaffold Ga0182232_1076298

Overview

Basic Information

• Taxon OID: 3300021060
• Scaffold ID: Ga0182232_1076298
• Source Dataset Name: Phyllosphere microbial comminities from miscanthus, Michigan, USA - G6R3_NF_07NOV2016_LD2 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 546
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003453	Metagenome	485	Y
F091225	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182232_10762982	F091225	GAG	VAKAYNPYLVDDGYEDEEKEVAAAEWNWGKKTVMVPNP
Ga0182232_10762983	F003453	N/A	LADDQLAALAVQGMLPMWKEKLLGQEFDNLGQLAQRVAGLNSQF