Scaffold Ga0214090_11039748

Overview

Basic Information

• Taxon OID: 3300020816
• Scaffold ID: Ga0214090_11039748
• Source Dataset Name: Food waste microbial community from Durham, Ontario, Canada - FW1 megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 716
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: Durham, Ontario, Canada
• Coordinates
  • Lat. (^o): 44.1763
  • Long. (^o): -80.8185

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027437	Metagenome / Metatranscriptome	194	Y
F062643	Metagenome / Metatranscriptome	130	Y
F096761	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214090_110397481	F027437	N/A	MTRQITVLEEKHSQDQAKMARRCADFEEKYSQSQIELSQVSAALDDANALSSSLHVQLNSEKVAYEPALRLIMLL
Ga0214090_110397482	F096761	N/A	MFIRSSYQALVDGMVGQLKSQGASIPEVASSLECWNPVLLRGRVSELEAANAG
Ga0214090_110397483	F062643	N/A	VAQTLDQGVALEGSIPTGLALGSVECTELVPAGLLQAASSGGLAPGRQLISPDLGIPSLFSNLQVLCCALV