Scaffold Ga0214086_1052064

Overview

Basic Information

• Taxon OID: 3300020813
• Scaffold ID: Ga0214086_1052064
• Source Dataset Name: Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 megahit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1206
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: Toronto, Ontario, canada
• Coordinates
  • Lat. (^o): 43.5479
  • Long. (^o): -79.6609

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080820	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214086_10520641	F080820	GGAGG	MDGKQKDARYERWLARAAAAYERMFCDKNQKELVTLTEREEMAVALSKELAAFLLEEHVAADPAKAPAEASLGCCPKCGQPGTPAPPKGGKRGAGMPERMVRTRAGDIDIRRERWKCGRCRIVFFSARRSPEVGHGRV