NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300020813

3300020813: Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 megahit



Overview

Basic Information
IMG/M Taxon OID3300020813 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0130338 | Gp0238878 | Ga0214086
Sample NameAnaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 megahit
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Toronto
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size729045788
Sequencing Scaffolds24
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus3
Not Available13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes From Anaerobic Digester Of Solid Waste
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationToronto, Ontario, canada
CoordinatesLat. (o)43.5479Long. (o)-79.6609Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F005744Metagenome / Metatranscriptome391Y
F011397Metagenome / Metatranscriptome291Y
F018007Metagenome / Metatranscriptome237Y
F020177Metagenome / Metatranscriptome225Y
F029455Metagenome / Metatranscriptome188Y
F039153Metagenome / Metatranscriptome164Y
F041155Metagenome160Y
F047561Metagenome149Y
F047698Metagenome / Metatranscriptome149N
F053724Metagenome140Y
F061015Metagenome132Y
F066219Metagenome / Metatranscriptome127Y
F069433Metagenome / Metatranscriptome124N
F070092Metagenome123N
F071210Metagenome / Metatranscriptome122N
F072819Metagenome121N
F078675Metagenome / Metatranscriptome116N
F080820Metagenome / Metatranscriptome114Y
F085739Metagenome / Metatranscriptome111N
F098918Metagenome103Y
F099327Metagenome103Y
F103328Metagenome / Metatranscriptome101N
F105265Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214086_1003585All Organisms → Viruses → Predicted Viral4468Open in IMG/M
Ga0214086_1052064All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1206Open in IMG/M
Ga0214086_1067225All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus808Open in IMG/M
Ga0214086_1109544Not Available597Open in IMG/M
Ga0214086_1146154Not Available571Open in IMG/M
Ga0214086_1200769Not Available694Open in IMG/M
Ga0214086_1233800All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1925Open in IMG/M
Ga0214086_1237002Not Available920Open in IMG/M
Ga0214086_1241572Not Available540Open in IMG/M
Ga0214086_1293299Not Available6802Open in IMG/M
Ga0214086_1313140Not Available16725Open in IMG/M
Ga0214086_1346666Not Available1200Open in IMG/M
Ga0214086_1362921Not Available826Open in IMG/M
Ga0214086_1389355Not Available878Open in IMG/M
Ga0214086_1421301All Organisms → cellular organisms → Bacteria3024Open in IMG/M
Ga0214086_1449634Not Available651Open in IMG/M
Ga0214086_1462914All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum1648Open in IMG/M
Ga0214086_1552304All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans1981Open in IMG/M
Ga0214086_1558883Not Available1381Open in IMG/M
Ga0214086_1588246All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus1166Open in IMG/M
Ga0214086_1626883All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus3185Open in IMG/M
Ga0214086_1634845Not Available727Open in IMG/M
Ga0214086_1637801All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1202Open in IMG/M
Ga0214086_1641658All Organisms → cellular organisms → Bacteria2317Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214086_1003585Ga0214086_10035856F098918IFQTALMDKMWDNQDFDKMKMQDRENMAVQCGLDLRKLIHTYTGLDTHKIEEFL
Ga0214086_1052064Ga0214086_10520641F080820MDGKQKDARYERWLARAAAAYERMFCDKNQKELVTLTEREEMAVALSKELAAFLLEEHVAADPAKAPAEASLGCCPKCGQPGTPAPPKGGKRGAGMPERMVRTRAGDIDIRRERWKCGRCRIVFFSARRSPEVGHGRV
Ga0214086_1067225Ga0214086_10672252F069433PVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDGSGCMDFTDPTITALSTEVRGIHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECQYSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGTCEYSGGHNHSAWNCKCNPYSW
Ga0214086_1109544Ga0214086_11095442F061015MAERKRQRQVRCENQYVQDRLSSQKMSQVYHWLVPEDPLGEPAAELALAKHEKDRSHLRASFL
Ga0214086_1146154Ga0214086_11461541F071210MGLGGLNMKEKRWLGTQQKYEFHCFYCGGFHITGNCPQIVKAMNGWKYDRSCPETGHIKIVPNGDEYPTVLAFNGYHYRVVGLWGIPGRLLWLELERFYGDTIVAATFCPDELMEMDLGMSDDEQLSAWLGGLPFLSVSPRVAQVGRTDYSDASAARGE
Ga0214086_1200769Ga0214086_12007691F105265MNGKKVTKAAIDRALADPVTDALSKHGITLDELARRLRQDLDRKETKILKVKGAIFDWAEYLERETAKLRGEDLPAPAVEKPYRVLASSSDETVIAIDVDSIGTQVEAREDAQKLLGLYKERLELSGPGGGPLSYDDIPAEERELLLAVTRDYERRLNEKSAKRGKAAGRKVGKTGRRTRQDRPGACESRCCL
Ga0214086_1233800Ga0214086_12338003F039153MKYTVITPAATKQYNTAVLFLNNSHGARRLNFSPFHKEVKQWAKHQGYSAKLYLRSAAIECNNPDLPKESELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVLCEIQDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARYERA
Ga0214086_1237002Ga0214086_12370022F041155QVGVHRGLRADGDMSTVGFGLSALLSLGRLNLVESII
Ga0214086_1241572Ga0214086_12415721F103328MFRKEDGAIDMVSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTNVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQ
Ga0214086_1266958Ga0214086_12669583F066219LEANMKKVFLVLLILCIGCLIHANIVEVFEAIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVADTKYGAFNFGPFIVVEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW
Ga0214086_1293299Ga0214086_12932999F078675MPDDSIYKHTPGPWSIYNHGDSNQGHYDGYLKTDIRAGAGLIHVLQSVAGNTFQRLAANVHLMAAAPSMRDALWAIANMQVKEETDKGEALALCMSIARLELEKCSTAGK
Ga0214086_1313140Ga0214086_131314016F047561MTVSNIEPQNIVPDFGTLKRGKLDILVNWNITSATKTDDMGNEYTEWQYESVRINWVLPAVYESEAAIQAYLNANYDEGENILGWAQATRVSKSSVGT
Ga0214086_1346666Ga0214086_13466661F047698MQQATAIVGVLIGFLILTQIGIFVCDAMIEASSVNESSQLYEAQTEAINTFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGF
Ga0214086_1362921Ga0214086_13629213F011397PVSQYERFCDGYDYILKNSSAEERLEWGINDDELQRTIKPGEKYIYQVAKEGREFKIMSICFANYVIIRKKIFKFEDD
Ga0214086_1389355Ga0214086_13893552F099327MATEGFFQGTSGEEISLLVDGVKIMALQNLSWKASQSKSPIRGAGYRKPHAMGRAFKEYEVDFEVKELNKAVIEEGVNSRRSREVQIKTFKIGDQEFSDLLDLRNCTILIVYPPKNNATRIIRFLGFEFTDVEGGFSIDDESVGRKLSGIALDAEGLV
Ga0214086_1421301Ga0214086_14213013F001564LCDPRLCPDAPEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGVRISLEEIGADEFYAMLILEEERERLDAERVNRERS
Ga0214086_1449634Ga0214086_14496341F053724IRVLVTLQVDECEPDAKIDRETMEDAAVEAVENAVRFAYDNGFSHTYADELSIGFVDAVLYEEDLDDEDLDGN
Ga0214086_1462914Ga0214086_14629141F070092MAINDRLKPVAELLETNRQKIDLMISQRMASDLAIEKRKKELYDEVMAAKEKAFKDELADLEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKEE
Ga0214086_1552304Ga0214086_15523043F085739MREIPIAGETCCANCVHDATCSHRSALPGIALICDHFVNRTFPPEVQDAIQAGACCHICGAPAIIGGGGRVTCGNCLLAQAAAKAKIGDKIIKEWRGTVTTPPAPMFEAGADPDEVEE
Ga0214086_1558883Ga0214086_15588832F029455MRTIDLDLWAEGAAERLPKITITAQGLRFQGEDPEFDRLCLILGGWLKQ
Ga0214086_1588246Ga0214086_15882461F072819MCRGIGVCIRLPDRTGERVSIQAGITTARGIANVTLIHGEEMFQDQVKAQEVSFRIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDTLCEVYRDLGVEGDKGNVSVFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI
Ga0214086_1626883Ga0214086_16268831F072819MVMGMFQDQTKAQEVSFRIARLEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDVLCEIYRDLGVEGDKGNVSAFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI
Ga0214086_1634845Ga0214086_16348451F005744MDDETFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLWLHELIHDRIALEGYVCETCDTKGCHRPATWEIECRGVGVSGRPIYSCDEH
Ga0214086_1637801Ga0214086_16378011F020177MDNIDLNNTYWERLRGFVTELRVDARWILRQNNSDKPLGSLRIVSHPDLQPGFLRAFFMCVTSIRKKNVGEKIKTIEDFQMEETELEVYSVDDKIETDSFIQEASFKELEGMFGVKIFE
Ga0214086_1641658Ga0214086_16416583F018007MFNGWKITNILDVGLCELDTADGPYNKTGYRREHREDGFAITVGLMEYISGWSALEILYWLHEKQAIPRRYDNARRQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.