Scaffold Ga0214246_1000157

Overview

Basic Information

• Taxon OID: 3300020727
• Scaffold ID: Ga0214246_1000157
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 19422
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (89.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y
F044873	Metagenome	153	Y
F091214	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214246_100015714	F020485	GGA	MRIICTTKQHWEIKDGKLILGAKNDEFLAEQLTKMTVRIEAEIRLDIYEKICAIDFVNDRKTIVKSGIENVALQVQDICARIALGELK
Ga0214246_100015718	F035995	GGAGG	MSVVTPEQVERRLKELSKLIDEAHDQLVDSEANYHRNKAEYELAMAKSRIGLASKSSPTGKNYTVGEREDMALIENNDLHKQIATDEAIVKANRANVARLRVQVDIARSIGTSVRTGMDV
Ga0214246_100015738	F044873	AGCAG	MNPMIIERDVITIADIDEAIAHLAVMLKDRYGNRLTHQRKAFLMSEMDNLLDARLEALNEPNNNPE
Ga0214246_10001577	F091214	AGG	MRKPWVKSKEITLEDLAWLMFEKTTFLEAQEFAYDLGYEIVIKWRD