Scaffold Ga0214246_1000059

Overview

Basic Information

• Taxon OID: 3300020727
• Scaffold ID: Ga0214246_1000059
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 37036
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014940	Metagenome / Metatranscriptome	258	Y
F016642	Metagenome	245	N
F031398	Metagenome / Metatranscriptome	182	Y
F074312	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214246_100005910	F014940	AGGA	MATSLSTVYHLNRLAGTIINGVPQYDFDGAATRWGTVVLGAHNATRGIDVLNLIYAYRNGGKNYYEDTPGVLNLLAGTFGLGEAEAASRILS
Ga0214246_100005926	F031398	AGGAG	MATMKSSLTTKVPAPKNQGGHGSSDAVTQKTKIQPKSGPAKTGASNIVYTKQPSGTKGTGTTAGKPMK
Ga0214246_100005950	F074312	GAGG	MDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILSGDKSAS
Ga0214246_100005957	F016642	GGAG	MIVELNKDEVRVCTQLAVERWLTKFGSADQPNYAEGKVSGWLEHDLLASVRANVSEWAAAKRYNTTWSVPWYPNALHPQRKNLSDVGELGEVRTIRTRLAIPFWLKDINKLIIGTKILDEEYYTKVEVYGSITPRHFMNDKYRDESINGWRVPVEEFMYERSE