Scaffold Ga0214207_1000028

Overview

Basic Information

• Taxon OID: 3300020716
• Scaffold ID: Ga0214207_1000028
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 46121
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (89.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002689	Metagenome / Metatranscriptome	536	Y
F016143	Metagenome	249	Y
F036523	Metagenome	169	Y
F050095	Metagenome	145	N
F072099	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214207_10000282	F036523	AGGA	MNYGSPITGTLTGATAVVSLPNGAIQYPATLILNSSNGSRAIQLSFDNGTTYYSAVTPTLSETGQLVYALTYPATTVKFTGAANDTYTIL
Ga0214207_100002830	F072099	AGGA	MLQLTRYNKPTPIIVLTVEAGFPLVEVAGKRLDTLREDFYDNAVNCMNRRPFSPIVSPYDIALSGGEPYGNWK
Ga0214207_100002846	F050095	AGGA	MDWIDIIVGGIVAIFIVGGCLALYADAVNHPWGEDE
Ga0214207_100002869	F016143	AGGAG	MIRHKDNEHIWTPAGTDVTVRWKTLGWIPPSELPEYQAKWKYFQELPLRKLDDKAKEEYELVMKKAKVARIR
Ga0214207_100002876	F002689	AGG	MATIDQTDARLSTHEEICALRYEVINARLKRIEQIMITSAGLMICSMGGAVFTFLAHVK