Scaffold Ga0214210_1000399

Overview

Basic Information

• Taxon OID: 3300020689
• Scaffold ID: Ga0214210_1000399
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8699
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022823	Metagenome / Metatranscriptome	212	Y
F038566	Metagenome / Metatranscriptome	165	Y
F059676	Metagenome / Metatranscriptome	133	Y
F088286	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214210_10003991	F088286	N/A	MIQEIKLTGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDYEGHKMDIRVIVFCPTIMSSANPIYETLKYLDEDDIIMDYSDDKLLNKLDEIEKEKEE
Ga0214210_10003994	F038566	N/A	MSKINIYVNSKNRKSDESPSNFSVIIPDGLLKCDANEYFSLSVNSFYCYNDFYQCNINSNSFKIIFRTNLNAVYLTTNYNLNIGNPNVYDLMIDINSKLSGYLTCTYNEIKNKITYTRTYAQTTNYYNMYIYCVNSGSFFGLTNNVETLILTTGTESTYPININTIKALSIGIDGDISFNYNNMESNLTNSLYKASDLIFQMGLNVPRGYLLDYQNVDGGDSFCFNLGNKDRIKYFILSVYDQDGNTISDMTDYIIHMQFTINKKNQTNTLLKSLIDYNKQIYLIVGHIFDLIYKYLNHN
Ga0214210_10003995	F059676	N/A	MPVKSIGITNYSSRPMEKTTSMNKNVADHGNKAHYNKVGK
Ga0214210_10003998	F022823	N/A	MENVNIIEQDLENVEKNCEKVNCMALYEALMATLKLIYDIIFCCSKKKD