Scaffold Ga0214256_101250

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214256_101250

Scaffold Ga0214256_101250

Overview

Basic Information
Taxon OID	3300020685 Open in IMG/M
Scaffold ID	Ga0214256_101250 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 hypolimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3189
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031339	Metagenome	182	N
F086511	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214256_1012501	F086511	N/A	ANAQVDFDKEGLETLVQWGLVGILTKAIDEYRITPEKDESPTIARAKAVAQKRTKKQK
Ga0214256_1012503	F031339	GGGGG	MLEKYIVGATGFGYLVTGVLQFQKGATANAVIWIGYAIGQTGLWMNLK

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