Scaffold Ga0214229_100086

Overview

Basic Information

• Taxon OID: 3300020682
• Scaffold ID: Ga0214229_100086
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 34947
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041563	Metagenome	159	Y
F051645	Metagenome	143	Y
F054521	Metagenome	139	Y
F083609	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214229_10008615	F041563	AGG	MDIKVKIIKENKDGSANAQVDFDKEGLETLVQWGLVAMLTKAIDEYKVRPDEDEVTLEPEFPIKKRKKK
Ga0214229_10008633	F051645	AGGAG	VETGTTDRFYLPLIYVVKKHGSLNASAKALGVSQQRIFHWNKVKAIPDEYKILLHKKYGVPYKSFFTQLE
Ga0214229_10008638	F054521	N/A	MSEKQTDAIKDFPMEAAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPAEPKPSPIVTQ
Ga0214229_10008661	F083609	AGGCGG	MATQILPLQILNDGYRNATLKITGWVNAGDITNYVVLDPSTLSQIDAQGTIPKLVRIKRINFDIQDGIQVTLNWDGATPALLWECAGRGEIKAASFGGITDNATTPNGKITLTTFGGAATTALTSFTIVLEIIKD