3300020682: Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 hypolimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300020682
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0053555 | Ga0214229
• Sample Name: Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 hypolimnion
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49769621
• Sequencing Scaffolds: 32
• Novel Protein Genes: 37
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13
Not Available	10
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → hypolimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F001774	Metagenome / Metatranscriptome	636	Y
F006660	Metagenome	367	Y
F008879	Metagenome / Metatranscriptome	326	Y
F011665	Metagenome / Metatranscriptome	288	Y
F013252	Metagenome	273	Y
F013852	Metagenome / Metatranscriptome	267	N
F014882	Metagenome / Metatranscriptome	259	Y
F018653	Metagenome	234	Y
F024742	Metagenome / Metatranscriptome	204	Y
F026214	Metagenome / Metatranscriptome	198	Y
F031339	Metagenome	182	N
F032129	Metagenome / Metatranscriptome	180	Y
F036523	Metagenome	169	Y
F040411	Metagenome	161	N
F040982	Metagenome / Metatranscriptome	160	N
F041563	Metagenome	159	Y
F044986	Metagenome / Metatranscriptome	153	N
F051645	Metagenome	143	Y
F054521	Metagenome	139	Y
F058718	Metagenome	134	Y
F066311	Metagenome	126	N
F066497	Metagenome	126	N
F067363	Metagenome	125	Y
F069614	Metagenome	123	Y
F069662	Metagenome	123	Y
F079674	Metagenome	115	Y
F082373	Metagenome	113	N
F083609	Metagenome / Metatranscriptome	112	N
F091221	Metagenome	107	Y
F095137	Metagenome	105	Y
F096492	Metagenome	104	N
F099296	Metagenome / Metatranscriptome	103	Y
F100257	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214229_100003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	145028
Ga0214229_100021	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	76648
Ga0214229_100069	Not Available	41270
Ga0214229_100078	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	37116
Ga0214229_100086	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	34947
Ga0214229_100113	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	29679
Ga0214229_100295	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14829
Ga0214229_100583	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8252
Ga0214229_100807	Not Available	6222
Ga0214229_100818	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6168
Ga0214229_100842	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6039
Ga0214229_101166	Not Available	4532
Ga0214229_101511	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3673
Ga0214229_101701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3294
Ga0214229_101785	All Organisms → Viruses → Predicted Viral	3187
Ga0214229_101831	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3128
Ga0214229_103344	Not Available	1781
Ga0214229_103508	Not Available	1706
Ga0214229_103880	Not Available	1566
Ga0214229_104937	All Organisms → Viruses → Predicted Viral	1275
Ga0214229_105292	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1206
Ga0214229_106459	All Organisms → Viruses → Predicted Viral	1031
Ga0214229_107647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	912
Ga0214229_108388	Not Available	850
Ga0214229_108772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	820
Ga0214229_108928	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	809
Ga0214229_109849	Not Available	756
Ga0214229_110613	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	720
Ga0214229_112258	All Organisms → cellular organisms → Bacteria → Proteobacteria	659
Ga0214229_113208	Not Available	628
Ga0214229_116352	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	548
Ga0214229_118007	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214229_100003	Ga0214229_100003109	F011665	MQHQLNTTPITQFTQLLRASELSQQKEVKMTIQQARLLNLALSDMMEKLNQDYESMYNALRKSVDTSVVQVLMDGGEF
Ga0214229_100003	Ga0214229_10000398	F026214	MAKNYRSFSYFESRPDIVKLFEDLEAFHDFCRIELRKFDPAELYRKDSKSYGAYLASKRPKKPYQGNKPWNNNPNYTNNKPKFVKK
Ga0214229_100021	Ga0214229_100021144	F000324	MDILILPPAHSLTYDGATLNIYHANKGEGLPHHVHTFSHATMCHSGSIIVRKEGKEMIVTKETQPINLTANEWHEIEALEDNTVFCNMFSEGKY
Ga0214229_100069	Ga0214229_1000694	F079674	MDRNLEFLLSEFKDRMEMLSEAILRGNCPTIEEYRYICGQLRGLEAACGIIADLKQRMENSDE
Ga0214229_100078	Ga0214229_10007837	F031339	MVEQWIVAATGIGYLITGILQLQKGAYANAIIWVGYAIGQTGLWLNLK
Ga0214229_100086	Ga0214229_10008615	F041563	MDIKVKIIKENKDGSANAQVDFDKEGLETLVQWGLVAMLTKAIDEYKVRPDEDEVTLEPEFPIKKRKKK
Ga0214229_100086	Ga0214229_10008633	F051645	VETGTTDRFYLPLIYVVKKHGSLNASAKALGVSQQRIFHWNKVKAIPDEYKILLHKKYGVPYKSFFTQLE
Ga0214229_100086	Ga0214229_10008638	F054521	MSEKQTDAIKDFPMEAAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPAEPKPSPIVTQ
Ga0214229_100086	Ga0214229_10008661	F083609	MATQILPLQILNDGYRNATLKITGWVNAGDITNYVVLDPSTLSQIDAQGTIPKLVRIKRINFDIQDGIQVTLNWDGATPALLWECAGRGEIKAASFGGITDNATTPNGKITLTTFGGAATTALTSFTIVLEIIKD
Ga0214229_100113	Ga0214229_10011339	F013252	MATKKSAEDQLGFRKAYKMTGTPGYAGGPGETTIDKGNSGSKRANNAVLNQNKMAKSPKVGPDKNLNEIGGGNFY
Ga0214229_100295	Ga0214229_1002955	F044986	MSLASNKILVSNVATNAASGYFQAYAAGNATVVMPAGIYYIAPTANVTIELNTDTDGNISNASWAVVVANNTGGLFIADGYNVRANVLAGTPTITLFATNGGQPVSGTYNK
Ga0214229_100583	Ga0214229_1005832	F006660	MAFQQIFEIQQKMTVNNRRIVGQQVTRAGYMNTAQYLTAVPWQFTVIPHNFLYYPKVRNIIQGIDNLDRQLPETIIFNSSLLSWFTSYQGDLNLSDAQALTLAAVPAANSQTITVGNLPSVSSTAAVFRAGDFLQLGSYSYKVSADVLRGSGSTVSVNLNRPVIGTVTTGTLTAVANNCTFTVVAEQCPTYTLNPMTNGAFVEWSGPFVFREYVTG
Ga0214229_100807	Ga0214229_1008073	F066311	MTWILTFFSDLFYILAMLALVGGIALYGVSYVAKWLPVIATYALLMQVGGIVLALGGGYFVAEHKGYEKRLAEDKAEIDRLNAEARQKEAELAQTLKEKTAALRKATNAISQKQVVTNQRIDAGELRFPTSCPVQASSDAGTPAGNPENGTQSEREILKTINDITTQGDTAIVRLNACIDQYNEVKGKVNAQQ
Ga0214229_100818	Ga0214229_10081810	F018653	MSQYRYVLMDEFGGACRKFVSKLEATPYLTAGMSLVTLPREPKANPYQVAVVMLQEAPF
Ga0214229_100842	Ga0214229_10084210	F040411	MTEEQILAEMEKIKEAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKNE
Ga0214229_100842	Ga0214229_1008428	F024742	MNNETQRIMEALMLIYGSDLQAATITVLLKDGDTAFRFITQTLPQKEAEK
Ga0214229_101166	Ga0214229_1011667	F069614	MDKKQVTKIADKEAKKEVHKHEHHMHPGMKPTKMAKGGVTGKAMKAVGRNMARAMNQKSSSRGR
Ga0214229_101511	Ga0214229_1015111	F099296	KPQHYKKGWYILTGPKGEQYSMPPEKFHELKDDNGDGICVPKKIIKLAKLADHDGVVNTSWGEPLHYKAGEDVIIRHGDNDYGVVKKDIFQQTYNIGK
Ga0214229_101701	Ga0214229_1017013	F091221	MAKHLENFGKWYDGILNLFPFCLDDTWIKTIGIAWLFTVEGKWSFIPKIVPTNWQYANACVFVRFGLPFAFFMQLRASPTHLFQGGIGWKQSGRIAIHCRFQTDASSAIGYHVGLPNTDHASGFEYGRH
Ga0214229_101785	Ga0214229_1017855	F032129	FYLDLAEVNTSNSYTGSTIITYKVQAINNVTGVKLTVLQQPFVSIYTASRASDPFAYSEKTDIQWQLITSTGTIAAGVIVTGKLIANNNNVNPAFP
Ga0214229_101831	Ga0214229_1018313	F096492	MALTRYENIKVNTVTAGIDSIGQQTTTITLAFQTRALVQDVRDSMVATKDDRAYTKQVRFVVNYTPNTQNVSINQYQYSINWRNKDYKLLDVLEANDRMTMTFVCYRNDPITSV
Ga0214229_103344	Ga0214229_1033442	F100257	MNDEVEVRPVSVMRHNGKKYNKLLKSQAIRAHLNGAKFADVSKQFGPCEDTVRKWVAAYLAGSLTLPGLDPVTPRALVKQAKVQSEESFVSLIGQHHSGNIELSFKRSGLALDVKWPVTNAMECAQMIKELLQ
Ga0214229_103508	Ga0214229_1035084	F058718	MVSCYGSEFEIPDLLIEKFVFDFNALPGSGYREGVQQLRDAIEEILDVVAQEPDILEEPEYRTDFLRALAMKQAMNKLGILYDA
Ga0214229_103880	Ga0214229_1038802	F013852	MARSTFNGPILSGANRFGPVRDVGYTDLVQTALLDFSVTAPGANYGGGSGQFVASNNIPNSNAVIYTPQNGVFSNTGPTAASAPTADATNTVYRGVVFYLPYSCNITDVILDVGTIPKDNAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATFVGSQLTNSNATLQDFQNLQAGQEPAWFTQVVVTLKMTTTSAGLSSGQVEVTLRYNQNDMNIGNATTYPYGNFD
Ga0214229_104937	Ga0214229_1049372	F040982	AATTFLAIGNGAQTAAALEIPLATFNRWRYTEWFKKMVDDLKAEDNLKLNARLNKIVSRALDVTEDRLEKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIETKPQQEQIEKTVDARLAALAEQFKTFAKPKEKDITPKPLVIENEA
Ga0214229_105292	Ga0214229_1052922	F001774	GKMRNRRSNILTRRNTMALRLSVQTQFGAPAPDAYARITNFFGTKDQVQVQVAIYYNEDARHQNLSTVREDAHYIAIEDLKGDLIPAIYSVLKTFSQYEGATDC
Ga0214229_106459	Ga0214229_1064592	F069662	MDTKKLIPYSVYLPLEHHQKLKELAKQRKASVLIRNAIGMLVDGTDAFTTGYNVGIQDAAKVIYDCEEAQMIAIKGKDLGVVLSERIEELKR
Ga0214229_107647	Ga0214229_1076472	F066497	MTENEFQEWKNYHVTEEFFNFLKKAKVETQEAWANRQFVTEGENQFALGGVYSINQILDLTYEDITGV
Ga0214229_108388	Ga0214229_1083881	F013852	GGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATNTVYRGVVFYLPYSCNITDVIFDVGTVPKDSAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLAMTTTAAGLSSGQVEVTLRYNQNDMNIGTSTTYPYGNFD
Ga0214229_108772	Ga0214229_1087722	F036523	MSYNYGSPITGTLTGTTAVVNVPNVVYPASLVLNSAAGGRAIQFSFDGGATYYAAVTPTYTETSQIVYVLNFPVTTVKFTGAAADTYSIL
Ga0214229_108928	Ga0214229_1089281	F051645	MSQDRFYEPLLYVVKKHGSLNASAKALGISQQRIFHWNKMKVIPDEWKITLHKKYGVPYKKFFEQLE
Ga0214229_109849	Ga0214229_1098492	F014882	MTRVPDRLTEDEIAELRRRRPGVRASLACEGMVLTAEEEALFEQFDQERLTVDQRRDRILAYLQDRKAAKALAAE
Ga0214229_110613	Ga0214229_1106132	F008879	MATAFKKGDNVKVNTVTPQGPVQALRMDEDGTVFYLIEWNSAAGETHQRWFAESELVAG
Ga0214229_112258	Ga0214229_1122582	F041563	MKIEVKIIKENEDGSANAQVDFDKEGLETLVQWGLVSLLTKAIDEYKVRDDEIPFPVPKPKRKKK
Ga0214229_113208	Ga0214229_1132083	F082373	MNYEAWIAEKVNSGKEVTISLCLLEKLMYEPAIKHWIESTAKKFGCKATIHWKDDV
Ga0214229_116352	Ga0214229_1163521	F067363	PPARAAVAEWISMKWGFTALDNPDIYGTDLIIHRGSVPVGFAEVEVRSWNPHCPFDTIHVPVRKKHMLEVPKTLFFALNQDMTHAYWITGTRALSFPTIEMRDETKHEAYYDVPKSLFKYVDLTFS
Ga0214229_118007	Ga0214229_1180071	F095137	CRACGNVRTFTPTYKAKISHGVRKKMNDDPEFKQATVNRILPDIPIPPQIESPMGLDQFIADGDLWTEV