Scaffold Ga0214232_100566

Overview

Basic Information

• Taxon OID: 3300020679
• Scaffold ID: Ga0214232_100566
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3812
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F017785	Metagenome	238	Y
F086266	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214232_1005661	F086266	N/A	MPLDKTVRFANKFDFDAIYKILEHFCHTHRFEILKDEAKWSRQYVGKQLSMILAGAGFILIAEDLSGVLVAMKAPCFFIEGEYSLHEIMWHSTNDKTSLKLFKRFIEIGTEMKKTGEIKEAHFSCFTDSDFGRYGATKLQNTWKI
Ga0214232_1005662	F017785	N/A	MSQVIAPIQNTNNIRYADFVRIVTPSTEYRFSTAPTAITVPAVDALPFDGLGQLIGIGKIQRDIKSTANQTTITLVGIDTALLGVVLNGNLKGAQITMWKGFFNTDGTLITSGGSGGLYQYFYGFINTFNIGEQWMEEVRMYVGTVTVSAANIQMILQNRTVGRFTNDSSWEYFTPGDTSMNRVATISTIYYAFGQNS
Ga0214232_1005663	F000934	N/A	MSEQVTIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRSLLANLRYYDKSLEQYLNFASTGWVNYIAYQGDMTSSQIAACQWETASAGKNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPEYAVIGQYGTTVALGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL