Sample 3300020679

Basic Information
IMG/M Taxon OID	3300020679 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053369 \| Ga0214232
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020679 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0053369 | Ga0214232

Sample Name

Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	31359678
Sequencing Scaffolds	22
Novel Protein Genes	32
Associated Families	26

Dataset Contents

Total Genome Size

31359678

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	1
Not Available	5
All Organisms → Viruses → Predicted Viral	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria

Not Available

All Organisms → Viruses → Predicted Viral

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → hypolimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002539	Metagenome	550	Y
F004204	Metagenome	448	Y
F007405	Metagenome	351	Y
F009319	Metagenome	319	Y
F012318	Metagenome / Metatranscriptome	281	Y
F016247	Metagenome	248	Y
F017785	Metagenome	238	Y
F017967	Metagenome	237	Y
F020298	Metagenome / Metatranscriptome	224	Y
F020864	Metagenome / Metatranscriptome	221	Y
F021463	Metagenome	218	Y
F021910	Metagenome	216	Y
F024029	Metagenome	207	Y
F026565	Metagenome / Metatranscriptome	197	Y
F028086	Metagenome	192	Y
F036523	Metagenome	169	Y
F040982	Metagenome / Metatranscriptome	160	N
F054807	Metagenome / Metatranscriptome	139	Y
F066497	Metagenome	126	N
F075594	Metagenome	118	N
F078138	Metagenome	116	N
F082043	Metagenome	113	Y
F083483	Metagenome	112	N
F083914	Metagenome	112	Y
F086266	Metagenome	111	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214232_100037	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	44872	Open in IMG/M
Ga0214232_100175	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12542	Open in IMG/M
Ga0214232_100321	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6455	Open in IMG/M
Ga0214232_100363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5616	Open in IMG/M
Ga0214232_100475	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4382	Open in IMG/M
Ga0214232_100566	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3812	Open in IMG/M
Ga0214232_100723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	3074	Open in IMG/M
Ga0214232_101427	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1993	Open in IMG/M
Ga0214232_101503	Not Available	1938	Open in IMG/M
Ga0214232_101564	Not Available	1886	Open in IMG/M
Ga0214232_101768	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1752	Open in IMG/M
Ga0214232_102702	All Organisms → Viruses → Predicted Viral	1368	Open in IMG/M
Ga0214232_102758	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1349	Open in IMG/M
Ga0214232_103130	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1247	Open in IMG/M
Ga0214232_103256	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1214	Open in IMG/M
Ga0214232_103487	All Organisms → Viruses → Predicted Viral	1169	Open in IMG/M
Ga0214232_106480	Not Available	800	Open in IMG/M
Ga0214232_106874	Not Available	772	Open in IMG/M
Ga0214232_106953	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	765	Open in IMG/M
Ga0214232_107245	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	746	Open in IMG/M
Ga0214232_107579	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	724	Open in IMG/M
Ga0214232_110601	Not Available	588	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214232_100037	Ga0214232_10003722	F021463	MSDIENRVVKLEVISENHAEDIKELRETSADLKTTLHAIEKNLNQIKYVAIGALAIIAAQTVGLDKAIKILLGGF
Ga0214232_100037	Ga0214232_10003744	F040982	MTRRKKRDLKSEGKWWSDSQKLEAATTFLAIGNGAQTAAALEIPLATFNRWRYTEWFKKMVDDLKAEDNLKLNARLNKIVSRALDVTEDRLEKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIETKPQQEQIEKTVDARLAALAEQFKTFAKPKEKDITPKPLVIENEA
Ga0214232_100175	Ga0214232_10017515	F009319	MIESLVKPSPLDNDVAVMKILQLMGQISLRDLEYVLKVVAAVYKKVS
Ga0214232_100175	Ga0214232_10017520	F024029	MNDHIWTAAGTDIEERWKAKYGWVRPSEQPEYQAKFKYYQELPLRKLDDEAKVQYEAVLRKAKVARVR
Ga0214232_100175	Ga0214232_1001759	F021910	MGMSRHDAYYEPDNYDDRTDEIEERTWELLKVGGKFDYRTTSAIAEMLSELGVDDSKAIQDVIDSGDYEALGRKLISMSCDYHERYAREIAEFEIYD
Ga0214232_100321	Ga0214232_10032110	F002539	MNEHIWTASGTDITLRWRKAGWVPPSEIQSYKDKWKYFQELPLRSLDAQGKIEYEGTLKLNKIFRIK
Ga0214232_100321	Ga0214232_10032112	F017967	MGIEYYLKAAVSEYVDKDGATKKRYATIGIVTRTKKNDLMAKIEMLPLLGMKEGAFWCYLNVPEDKPTQTATQATAPDLNDIESDIPF
Ga0214232_100321	Ga0214232_10032118	F021910	MGMNRADAYYEPDDYDDRSDEIEERTWQLLKVGGKFDYRTSEAISEALSEMGVDDSQALQDVIDSGDYEQLGRKLISMACEYMEGHAKEVAEFEIND
Ga0214232_100321	Ga0214232_1003217	F028086	MVNESIPFAGNVKVPSDDCEETFFAVYPDFFYEGSTALNLWTQAWQAALDHVENKKPLIQLI
Ga0214232_100363	Ga0214232_1003634	F083914	MATGPINTNIRYPQSQFLDPLTQRPAREWLIWLQNPNVVSQTVNYIIINGGDINNTPIGDITPSTGVFTNLTALLGIGGGQF
Ga0214232_100475	Ga0214232_1004753	F020298	MTSPNFYLPYPVPQSIDEIQADMNAVINQPGVPQELQDQWKNVQNSPEVQADVDQAEANSDSMANE
Ga0214232_100566	Ga0214232_1005661	F086266	MPLDKTVRFANKFDFDAIYKILEHFCHTHRFEILKDEAKWSRQYVGKQLSMILAGAGFILIAEDLSGVLVAMKAPCFFIEGEYSLHEIMWHSTNDKTSLKLFKRFIEIGTEMKKTGEIKEAHFSCFTDSDFGRYGATKLQNTWKI
Ga0214232_100566	Ga0214232_1005662	F017785	MSQVIAPIQNTNNIRYADFVRIVTPSTEYRFSTAPTAITVPAVDALPFDGLGQLIGIGKIQRDIKSTANQTTITLVGIDTALLGVVLNGNLKGAQITMWKGFFNTDGTLITSGGSGGLYQYFYGFINTFNIGEQWMEEVRMYVGTVTVSAANIQMILQNRTVGRFTNDSSWEYFTPGDTSMNRVATISTIYYAFGQNS
Ga0214232_100566	Ga0214232_1005663	F000934	MSEQVTIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRSLLANLRYYDKSLEQYLNFASTGWVNYIAYQGDMTSSQIAACQWETASAGKNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPEYAVIGQYGTTVALGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL
Ga0214232_100723	Ga0214232_1007236	F002539	MNNAYIWTAAGTDITIRWRAKYGWVPPSELQEYKDKWKFFQNLPLRNLDDAAKEQYEQVLRKAKVMRIK
Ga0214232_101427	Ga0214232_1014272	F083483	MVKKKKNYNYYKLDVGFFPDIIKLCFDDKVFQQILKDHDVTLKANALDSGIAETHLIGDGKDAIIILVFDLSLVNDNLGDLVDTITHEVSHAVDHLAEHIGEEDNFVNETRAYLSGHLAGQIFKICMHEKEKHARKTDRAKTKQTSKTKRGYVSEVYINRDGGTGSHSSAELESIIRRAQDDDGQAEQETRTGF
Ga0214232_101503	Ga0214232_1015032	F012318	MAYNSAFSPFGPTYLVGSLAAVQVKSSNNVYPSGYRIVNITASAIRVSWQPQEPNDGTSTPVVTAPALTVPSYNTFYIPANGVQVFSGIPPNAWFLSSAASSAEITPGEGIA
Ga0214232_101564	Ga0214232_1015643	F082043	MAESFSYKITTESEVFTFDFSQVLLESETILTATCIAIVMNGVDNNPSAIVIGTPVIFNKTASQRIANGVSEVTYRLEMTITTSLGNTYVGVGDLDIYSADLV
Ga0214232_101768	Ga0214232_1017684	F002539	MNEHIWTPAGTDVTIRWRMNGWVPPSEQQAYRDKWSYYQNLPLRKLDDAAKEQYEAVLRKAKVARIK
Ga0214232_102702	Ga0214232_1027022	F024029	MNEHIWTASGTDIEERWIKQYGWVRPSEQPEYQAKYKYYQELPLRKLDDVAKAQYESVLKRAKVVRIK
Ga0214232_102758	Ga0214232_1027582	F004204	MVVYDPRGLTWDYWCSRMADLFAANQLGTVSEDKWRDWADGMQGIGYFVNSAVPDPRGFDEWYQWAESLVGIMNVDTRQL
Ga0214232_103130	Ga0214232_1031303	F026565	MFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPITLTITNEVAAQGKFTLVINDSTWGLMADDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE
Ga0214232_103256	Ga0214232_1032562	F012318	MAYNSPFTPFGSTYLVGNAAAVQVKTSNNVYPSSYRIVNVTSSLIRVSWQPPEPNDLAVTVTVTAPALTVPQANTLSIPANGVAVIGGIPPNAWFLSSAASSVEITPGEGLN
Ga0214232_103487	Ga0214232_1034873	F020864	MAFTKAADGVVSKGKTKGKNLGDTGPNIGIEGGKDSKGASGVTSIAMKQVGRNLARAANQKKGG
Ga0214232_105441	Ga0214232_1054413	F054807	MAFATRLGPWLLGTVKNTTGATAGTINNLGATTVAQTYNLTAAQ
Ga0214232_106480	Ga0214232_1064802	F036523	MSYNYGSPITGTLTGTTAVVNVPNVVYPASLVLNSSNGSRAIQFSFDGGVTYYAAVTPTYTETSQIVYVLNFPVTTVKFTGAAADTYRIL
Ga0214232_106874	Ga0214232_1068741	F040982	MPRRRKKRSLETAGKWWSESQKIEAVTTWLALGNLAQSAAVLDIPIATIKRWRYSDWWKKIEEDLRQEESLGLNARLKKVISKALDVTEDRLSNGNYQFNQKTGELVRVPVNIKDASRVANDMMNRSDIIEEKPIQQQIEKTVDDRLAKLAEDFKRFATAKEVKSEPLTI
Ga0214232_106953	Ga0214232_1069532	F007405	MVTHIGTAHQFTYDGAQLNIYHANKGEGLPKHEHIYSHATMCNSGSCLVSLEGRSYTMNKNSTPLNLPAGEWHEIEALEDGTVFVNVFAEGKY
Ga0214232_107245	Ga0214232_1072452	F066497	MTEQEFKEWKSYHVTEEFFNFLKKAKVETQEAWANRQFVTDGENQFALGGVYSINQILDLTYEDITGV
Ga0214232_107579	Ga0214232_1075791	F078138	MIPAMRNARATHVDFGFLRGVIGSNPNFMPSNIDMVLERKGSFLFGEWKREDEEIKQGQKILLKELAWIHRVLLITGYVDDAPHITLIQEVLPATGNLKVVGKSVADLMKYIQDWYKNAEEENARTL
Ga0214232_110601	Ga0214232_1106013	F016247	MSYFIVEHKYKGNYVMETLAGVEDIDTSLYKDLLGIWVCESPEECQAVENELKRMRHERSSQPA
Ga0214232_111458	Ga0214232_1114581	F075594	LEYSMSSTFTVSRDQIIQLALRKLGVLELGDVPDSATIANASLALNLLVKQFATEGLKLWKVNELVLPLVQNQTVYSIGPASQNPLTDLDTDKPLKVIQGWIRNTSVSPMIDTPIQMLSQQEYNVLGSKFSTGISNSMYYNVRKNSGNMYVYLTPDANTSQDYELHFMAQQPMDDINTGSQIPDFP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020679: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences