NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206126_10042618

Scaffold Ga0206126_10042618


Overview

Basic Information
Taxon OID3300020595 Open in IMG/M
Scaffold IDGa0206126_10042618 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2560
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041192Metagenome / Metatranscriptome160Y
F041441Metagenome / Metatranscriptome160Y
F097348Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206126_1004261810F097348N/AMSTLDTLYNNREMEKAREDYLRGYMNALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0206126_100426184F041441N/AMNEQTELLLDYQEAAIVALRAEVERLTLENKLLTLKLKKNEYI
Ga0206126_100426186F041192N/AMECLDYMSWALKGNHLRVYPVPTKENYTHKVGKKTVNLSYVKLVLEIGNSKHEGKELYKQHEMTEKICEIYKYYYDKRTK

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