Scaffold Ga0210401_10000097

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10000097
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99098
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (78.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F008273	Metagenome / Metatranscriptome	336	Y
F016585	Metagenome / Metatranscriptome	246	Y
F097751	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_1000009739	F000063	AGGAG	MLDQGFWTEVKLGGEHLRLFSEQNALGVQASVYNVNAKNWIAPSETAEDIEQGKDRAAEHARVYLKAAKLELPSLTWKKSHSA
Ga0210401_1000009776	F008273	AGGAGG	MNNNNAATRQDVIENSVDHQISSLANSATSPGKLETLLTSELDHDLIAWPRQYLETYLDSDASGRVPLDAEQLQDVLEAAFDRDATFAREYLEELSRERGPKALGDSELQIAVSRTEGIESQYELLFDPNDTRDLKHLIEKLDIRAWEKQKAQTTLPLETQPDTERRETTASVATHQAGSMAVELHDKTTGTDVRKLLGGGELPAGLQSVLRQMAPDARLQKAQTDSGTYRGGIIAETEKTLIQQITSHTAVIHGKDLLEMIPAVGENVRIVYSNDNGRVLPVKERSKTQELGR
Ga0210401_1000009778	F000673	GGA	VSKKAISRNFRYPSPELREQVRAAVKERGFRSEQAFLIAACEHEIRQGANAEATAQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKGMVGDE
Ga0210401_1000009783	F097751	GAGG	MRSLLAMMFYIDHKCDTQPAFRKMFLVFTLIFVLLLWSPWRPLLCPVLGVCPAPTVRADTAPQPKPIPHLAKHKKRIAPSPDQVPAESSDQVAAQP
Ga0210401_1000009786	F016585	AGGAGG	MENKTVQSEMNSVHGTSLFSSLLFVAVAAMVAGAALCLLPGLGTPQMVLPGASRMALVTMVMVLGFSGVLVSALLNLPDTMRRALLVLFATALLCSGFVALVGCFAVSGASSYWL
Ga0210401_1000009796	F000321	GAGG	MYISHVRTATYVQLRETPSPRTAGIVAKRRSANFGVYNVRLLSALDKLLRDKPRYMGELSTSINDALLAVDLNTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVAQKRECSMNQLVNSALLAYYSKTGEGELKRPAKGRGVSMRSYDTMSELERRELNQMLSGLSAVQPVSADVEEPDGTYYEYDRNLKATVKVTPDGERTPVAGLETQFERAPQRGQHKTAHEGTTL