Scaffold Ga0210395_10000192

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000192
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47568
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F001983	Metagenome / Metatranscriptome	608	Y
F007725	Metagenome / Metatranscriptome	346	Y
F027252	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000019216	F027252	GGAGG	LTHSFRRTTAPIFAILVALSMGMAGFSAQEKKVPQTAGVDNTKMGAYRAIAQIAYVQFQKGDAAAAAQLAHSLERVWDKGEDYGGDTALKKTHPDLFEQIDKAMDDFVLPLMDYKTKPPDPARIKAAYNAYLEKLKLAD
Ga0210395_1000019244	F000173	GGAGG	MKTFEVQFRFRDRSEETVELTVTVEASSLPGAVAKAARGFVKGLDRKQRFDMNKNGLEITAKSAGTTTPEQPAASTEAAAG
Ga0210395_1000019245	F001983	AGGA	MTRKNAWAGLAVAVLLGLPLAACKDTKTLQENEQLKAQVAELQKENGQLGNDIETMTAARDTLAKENETLKAELKARKTKRSGRKHRRNQ
Ga0210395_100001926	F007725	GGAGG	MRFRAILTLATLFMTCFTIAVFAEPLHLMGGPARTDRLPENQSVSGQIASVGDAAFAISIKKDKQGSQTVEFLVDDKTKVEGKLTIGAEALVEYRSDSGRNIAVHVVVTPASGIGPY