Scaffold Ga0210395_10000069

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000069
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86998
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (82.93%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000381	Metagenome / Metatranscriptome	1210	Y
F001621	Metagenome / Metatranscriptome	662	Y
F032359	Metagenome / Metatranscriptome	180	Y
F063959	Metagenome / Metatranscriptome	129	Y
F105588	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000006930	F032359	AGGAG	MAWLIRKLRIPASESSMGIVLTLCIITMGLMSVALLWQAQIIANQREAIQWLETLKFGG
Ga0210395_1000006935	F105588	GGAGG	MTRLGALVATVIASIVLWHECGEDVGVFCYRIGLGAFATLRSRALVPVPVPASQIILSRDRSACSTPSSTFSNHFTARKDFES
Ga0210395_1000006938	F001621	AGGAG	MNSQVPKYVTQGRAALLLGISEDELSRLSNETGLGHRECAGEQEETFFTYEELRKICMLTVHQVN
Ga0210395_1000006960	F063959	AGGAGG	MEHFLICNNSECHFVLDRRINGRSLDGAQLILKKCPACGGDWSSTCPSCAQALVVKLVAGLPQSGCCDRKLASSVRAA
Ga0210395_1000006971	F000381	AGGAGG	MCPACIVGTAVMAVGAGSTGGILAVYIGRFREFFRANGLGLFQKIKEK