Scaffold Ga0210395_10000008

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000008
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 330886
• Total Scaffold Genes: 275
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 184 (66.91%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000883	Metagenome / Metatranscriptome	849	Y
F001329	Metagenome / Metatranscriptome	721	Y
F001343	Metagenome / Metatranscriptome	719	Y
F002831	Metagenome / Metatranscriptome	527	Y
F003336	Metagenome / Metatranscriptome	493	Y
F022484	Metagenome / Metatranscriptome	214	Y
F023387	Metagenome / Metatranscriptome	210	Y
F040248	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000008151	F022484	N/A	MTVHSGAMTTSKQVRRSVTLPTRLAEQVERIARKRRLSDNRVLVELVEQGLEAQKEKEKAFFALAERFRAAADPKEAKQLGDEMGRFIFGE
Ga0210395_10000008165	F001343	AGGAG	MKFATVSKSLVMGLALLLASSAFAASKADLVLQSPATINGAKLKPGEYKLQWDGSGPNVEVSILRGKTVLAKVPARVVDLSSPSQNNAAVVKHNDDGTSTLAGARFEGKKFALEIGDSSDGMQAGSSK
Ga0210395_10000008175	F001329	GAGG	MAQNHYTTKTKRRPKSGNRKDSVATTMAKLRELAAAEAKKSAK
Ga0210395_10000008189	F023387	N/A	MNLKSAHPHAKSHHPDLPAHATIGRSQMAKRRSNRMALRASIGLSGEDRQKCSFTMPAKATKLNKHGAAVQLSRELLVGSVLTVDNKRGTQIAARVVAQLAAMQGVSTYAIEFVEQDERAQTFWGITFPPSVSNA
Ga0210395_10000008213	F040248	AGG	MTMNDLSSDNPRTPVTKQPYEKPSFRYEKVFVTSALTCGKISHTDAACGTLKVS
Ga0210395_10000008244	F003336	GGAG	MHMNANGAAAYGMYPRNVALPEVVHALNRAGFENEDICMVLSPAHPVATVVRDAKIVDADWAESATSARMIGWFSEFGAVVIPTVGFFIRSQAFFHALVIEQNFPSMSRGSRTLMGLGFSEDEAKRLGHQLCDVGALVYVSCHENGKANSAIELLRREGAREAASLGRAKAAEAAA
Ga0210395_1000000875	F002831	N/A	VPNRTPQHDDDPKHRRHAVYASETTGLLLIAFVLLVLTLLRYWRYIHWSLR
Ga0210395_1000000878	F000883	GGAG	MSGQVVLYFEDQADALRFALAAGSVMAGEGAKFSSDLLEETARVTRIRLDAVNAGSSKKASPARAA