Scaffold Ga0210399_10000315

Overview

Basic Information

• Taxon OID: 3300020581
• Scaffold ID: Ga0210399_10000315
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39304
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048485	Metagenome	148	Y
F051436	Metagenome	144	Y
F064544	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210399_1000031525	F048485	AGG	MKKRAHQPKRLRAEDFAGDGEPYSEVTVTISIRILGTGITRSRLAVNVCPDPALEPLARKSLDVLKKENYGFDDDDVFGVCLSKNFNGWEDLDEDYPRIDERGKSGFDKDRLKAMNAYIKESVDWALALNKQGMEEAVRQAPKPGGKDLVM
Ga0210399_1000031526	F051436	AGGGGG	MLGTLPTPILLDIAILFTALCWGLGFFIADRKVYLFASLAIGCFVCLLGYSVASVGAPAWAVVAAPVPLDILLLWYVLRKPRKMAVAYVSTWAIYIVLHILLSSLLRYDSLIPPWRLHR
Ga0210399_1000031534	F064544	GGAGG	MLSSTPFDRKLQLSGIILVLGLVVEAVCLLGHGPIAFIVFAGLGGLLFAVGILLYLYSLVGGKVEPSQR