Scaffold Ga0210403_10017414

Overview

Basic Information

• Taxon OID: 3300020580
• Scaffold ID: Ga0210403_10017414
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5744
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002750	Metagenome / Metatranscriptome	533	Y
F014492	Metagenome	262	Y
F054194	Metagenome / Metatranscriptome	140	Y
F058741	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_1001741410	F058741	GAG	MDLYPTTETWTGTPGAIAPADGNAASGAAPTSSPASDVDILDGAARQQDARRGSGQAGATQALDLGANNERLEDLKPKLVHALRELVRQYREEGVVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQRFSDDRALKEMPR
Ga0210403_100174145	F014492	GGA	VNLSQSLLEKLTQTVYLDRVLKISGVAGFVVTYLNAWRSMHLGLKVGFVVSAAAWFVGARFTKIYR
Ga0210403_100174148	F054194	GGAG	MPVRRRQKISTTIAPENGAFLQSLIKRGKASNLAEAVDRAVTVARRAEARKKLEDATTAYYASLSGEALKDEQQLEAAVGYAVSQVDPDGE
Ga0210403_100174149	F002750	AGG	MRDFLQRLLQGRYVGLLEGEVARLRAENRALTNSLLGTAGFPPVEYPEPAKPQPLPRLRKRSWHQIQAWKEAEATTNEVAK