NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10004472

Scaffold Ga0210403_10004472


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10004472 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12047
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F001966Metagenome / Metatranscriptome610Y
F004291Metagenome / Metatranscriptome445Y
F022721Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000447213F001966AGGMEKPDPYGEWVLFGTKREAGEKPLPVDEELLAAAREAWPHVLAHARRELLGKEAGSDRTALAADVWERVLRSVAKTRQRSRDYQPPISDLQSYLIGAFHHRFNRLLKSEHKRQETIELVASTVDLELIEGALDTEWAAELERAITLKQITNRMDGWTKKVWQARQYGYSWKDISRWLGVSEEQARKKFEYNLEKLRESIVRLLKRKKLRPAV
Ga0210403_1000447214F022721GGGGGMAAYDEMSEAERRRLAEVLGSLTGLQGGPTGSLPDGTHYEYDPTLKATVEVTASGERYPVKLVDGRFIREGERAVAHKAGE
Ga0210403_100044727F000092GAGVKQHLGRQSGVQTVEVSLIDGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDSSGGLALQVAPKQSFVLTANELSKELEALAGTQTMVTVRGQLYKKPTGKKKADPSAPLKLLILEVQKKE
Ga0210403_100044728F004291AGGAGGMNTRRLALLALLVSIASTAAQAQIKHIEMRVEGMT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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