NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000037

Scaffold Ga0210403_10000037


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000037 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145489
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (75.97%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F000532Metagenome / Metatranscriptome1046Y
F001645Metagenome / Metatranscriptome658Y
F003039Metagenome / Metatranscriptome511Y
F003144Metagenome / Metatranscriptome505Y
F080446Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0210403_10000037100F003144AGGAGMTWLRRALHLPAPESNIGLVLVLCVVTMSFMSVALVWQAQIIANQREAIQWLEQLKFGS
Ga0210403_1000003728F080446GGAGMISDEFVQKEILRLAGNGHKSACISTRRISAFYNVPERRIRKQLTLLAEQKKIRLTGWKGSALCPYSDWANSEDFVNSQADGGHFHVDLLD
Ga0210403_1000003741F000532AGGVALIKQRLDVDAVITPGKTGQFEVIADGERIAERGGNWFTRSFGAGYPDLDSVLKLLEKHRRPQG
Ga0210403_1000003744F000262AGGAMTPEKRIQVPRQIRFGPLNQILRFGGLAIFALLCVACNGTNYGVLQPNPEDLCKCLPLEPDVLDFRHTAKHVSIPVIAAQEIGVDTILSWTQDDIVLPEAPRTGRELQVFHVATAFLQEASVNGADCDVHFEISMTADKNASRVIVETPVDSQFCSARQNAQTQLSKHGFKLDSQTGGELPQALPVEVLGMAFQDFDHARGSAQVATNWELHPAIVTIP
Ga0210403_1000003786F001645AGGAGVAILKAPSKQPKTTTLQVRLEEEVRHKLDRYAEFIDANASYVVSEALKLLFRKDEEFKRWLGQHANNHKQEQIQGDALTKTA
Ga0210403_1000003792F003039GAGGMTMKAQELKYVTRRRAAVLLGISEMELSRISSESGFGHRETAGGQEETYFTYEELRQICLLAVQHVH
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