Scaffold Ga0210403

Basic Information
Taxon OID	3300020580 Open in IMG/M
Scaffold ID	Ga0210403_10000028 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020580 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	162978
Total Scaffold Genes	150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	124 (82.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

162978

Total Scaffold Genes

150 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

124 (82.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F000239	Metagenome / Metatranscriptome	1488	Y
F001983	Metagenome / Metatranscriptome	608	Y
F002309	Metagenome / Metatranscriptome	572	Y
F002695	Metagenome / Metatranscriptome	536	Y
F076318	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210403_10000028100	F000239	GGAGG	MDESKRRAVRFLEKEIKTYTALSLFLSKKGIKEPVRVGARKIVISPMFYKDRVKEAKKLVYELRKPS
Ga0210403_1000002812	F000173	AGGAGG	MKTFEVQFRYRDRTERTVESTVKVEASSLPGAVGKAAREFVKGLDRKQRFDMNKNGLEITAKPTGTTTETQASAEAAAS
Ga0210403_1000002813	F001983	AGGA	MTRKNTWVILAMAGAASFSLIACKDTQTLQENEQLKAKVAELQKESGQVGNDLETMTAARDALANENERLKAEIKTLKTKNSGKKAAHRKRRRS
Ga0210403_1000002821	F002695	AGGAG	MVLRTHWTGGVALANSTVANMISLFILVFAVSALVRFGVSQWRAIWISTANQPLSESLRLTAGIDAASIGAGDFGSLLDLCNELSPELRKTSPWLKEVSLYYRAVAAFERAFRTKFPSFSQWANGEMQICSRYVAVTLDQSIAMNLDRQFAARAS
Ga0210403_1000002833	F076318	GGAGG	MIEVGAHTVLEFVKMQFQGKWSRFSLVQQIGYDVNTGGLLMVVTEDENAAKTTYWFKLAAGHEVWVLEDVVHIPAMCIKSAPGDQLRCNA
Ga0210403_1000002846	F002309	GGGGG	MEHFKTEKWIDFVNEVVRADEKKLMEKHLKEGCKRCMETVSLWQRVRESGAAEGKYQPPEGAVRLAKAAFAGAGLAGQRKGADSRIKVLFDSFLQPVFEGARSAGVSTRQMLYRADPYQIDVQVEVKPGSNRILITGQLLDLSNPEIIARDTRILLSNMRGHVVHTVANQFGEFSGEVDNSGDLQMTFARSGGQPIVISLREALGRLPGGRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210403_10000028

Overview

Ecosystem & Geography

Associated Families

Sequences