Scaffold Ga0210407_10024164

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10024164
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4520
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006480	Metagenome / Metatranscriptome	372	Y
F043497	Metagenome / Metatranscriptome	156	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100241642	F006480	N/A	MRRVFIGGIALLLCGGIYARSKSDPLMFVFLRVDHQQDVAILRPMIAPDIGVQLDSGPRELKPGTVLKCASTVREHDAIVETRIAKVTDLMLDCGEHKFVVKTVEFSPRAK
Ga0210407_100241643	F000512	N/A	MIRILRETHETPDAVAHRLMRAGGINRSGEANYRAVWGWNRLAWIGGKFEDRDEHGALLRERVELRQEPKYPAVNRWHIERWLPPEAYGSPRAWYAQTIERENGISIPALGPYPSRGEYEHCFTLEGPRGEFLQLTPTIAEHIARAIEFSRKFTRAKTRSRLYEREQRTERKYDQWAFDVMDEGVPAFHKQPFVTVA
Ga0210407_100241644	F000739	GGTGG	MKRFEIWLRGILAAAVSGGAGGVLTGFAAVGIDPQHFNLQSGSGATLRIAAAAALINAMIGVAAYLQKSPLPTE
Ga0210407_100241645	F070523	AGG	MLLFPDERVAIHAKLGSVLKGGDPAEILLVIILLLALRPPSRRKAPKRKGGQSSKPKNT
Ga0210407_100241646	F000696	GAGG	MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDALLVVTAVTQMDTSLQVSITDATAPPNQLPTDLLVPVKIWERPSGSTGDFLEMVDLTQHGGLPSRAQDVALSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDAMSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARTGYTPF
Ga0210407_100241649	F043497	AGAAGG	MIRSKRAMGFLWVALALLFHAWPMVPVAKGQGTRKDDIVFNSRGIPLAGATVRVCAMPASGQPCTPLALIYSDAALTQALANPTTTDGLGNYFFYAAPGKYEIEISGPAITTKQIPNVVLPNDPASPNFSAVSAFSLTLSGNLTVSGNTTVVGKM