Scaffold Ga0210407_10000316

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000316
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58097
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (62.07%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000552	Metagenome / Metatranscriptome	1033	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F002750	Metagenome / Metatranscriptome	533	Y
F006480	Metagenome / Metatranscriptome	372	Y
F029221	Metagenome / Metatranscriptome	189	Y
F054194	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000031610	F006480	N/A	MRRTFISGLVLLLCGGISARGKNDRLVFRFVYVDHQRDVAILRPMIAPDIGVQLDSGPGELKTGTVLQCHSTVREHDALVEGQIAKITDLLLDCGEHKFVVKTLEFSPSSK
Ga0210407_1000031614	F002750	N/A	MRDFLQRILRRRYVESLEAEVERLRAENRALMNSLLGTAGFPPLDFPETPKPQPLPRLRKRSWQQIQTRRESEAARSIGTETMAGH
Ga0210407_1000031615	F054194	AGGCGG	MPARANRQKISTTIAPENAAYLKSLLKRGKAGTLSEAVDRSIALARRADNRRRLEEATASYYNSLSGVALEEDRTLERALGHEASQVDFDGE
Ga0210407_1000031618	F000885	AGGAGG	MAITSMAANAKTVFIGEIAQVAGIAAVVAGVVLSLHHWPAAVALLGGGVAFYVGKKLRGA
Ga0210407_1000031627	F000188	GGAGG	MGAKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDVRARLNEWVADFALAGQKALAGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVQWSEQVRRRCGAEFLRRGMFPPRKYFEPGS
Ga0210407_1000031632	F000536	N/A	MVELSPQQMKIIERLFEAGFRPIAIPPYESALCMRRGNCAAVLAPELHSGLKLLAPASYIVDGNLSVRLKRGSGEVFAWKKTELPVTSERMQELNAFRQELTEILDSPAIQ
Ga0210407_1000031650	F000552	AGGAG	MPRKLVWTEGANVQRWACSECAWAFNPTWPLVGNSIEEMKTNFGQQLDKEFASHVCAEHPRATTNPG
Ga0210407_1000031651	F029221	GGGGG	MKRVSTFFEIILSATLLFLGLYLLYGGSSNKSVSEPAMLIGGAVCITLSAMTLVSAVRSILWHRRMLRRSTSIGN
Ga0210407_100003167	F000696	AGGA	MPVVGSSAYNTAGQITALVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRVLGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSISDSTAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLAERWDDAAADAIEDLVSAAVRREQQSARRRRPFSARNGYTPF
Ga0210407_100003168	F000739	AGAAGG	MTIRRLEIWLKGLLAAAISGGAGGVLTGFAALGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPSE
Ga0210407_100003169	F000512	N/A	MIRVLRETHETPESVTHRLELAGGRNRFAEANYRAVWGWNRLAWIGGKFTEHDPQSGSLLREVVELRQEPKYPAVNRWHIEKWVPPEVYGSPRAWYAQTMERENGVSIPALGPYPVRGEYEHCFTLESARGEFIQLTPTIAEHVARAIEWPRKFPNSAGKRRLYDREQRQENQYDQWAYDVLDDSVPAFHKQPFVVVP