Scaffold Ga0210407_10000066

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000066
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 138184
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (74.40%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F000438	Metagenome / Metatranscriptome	1143	Y
F001983	Metagenome / Metatranscriptome	608	Y
F022248	Metagenome / Metatranscriptome	215	Y
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y
F056112	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000006649	F050161	GGTGG	MPALADGDVILRETAQKLAERVAAILGLYGSLRLEWHPDAKWSEGESNHWREILRGEFEKRPLNLTEDAGAPALGVFAVETPTQVVLTAKTRISDRDEVRIVAVARALLPPGSLPVAPVRLERQMIYESPDRILDASSLWNGAEGGLALLLYRNFEIVALRVDSGGAVKQSVSLNPANLKPSRDPRAEMTPRGAVASVELLGKSCEFSWESPADVKCHAEKPAAAGKSVWRGATLLTSPCDGSSWKLLNSGSEPNIREVLQVVPDGALRESSAAVLSEFPGPILGTNGEQNPSSALVVVQNLRTGNYEIYKITLACGN
Ga0210407_1000006650	F026812	GAGG	MVAALAVWAVVFGGEVAQAQASSCADLRAQKEKVYGFYLTQLNETQIDAKSKEIDAYWKQLQSVGPEGVSCLKDMLAAEKTDHIFQFDAASFLFQLDKSPESLNLVKDSIVQTDFQETDPANYLSLALELGQRGVNIQSLAAKLLLFPNAIIHISEHSLDLDSDTAALFLYGSMDSTKASKALIAQLQAQEPFVRAAAAHLLAEEMTEDAFRTLSGWSGLADIKEDYRRNDIQAVMKYQAPDPAEFANPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMREKKPTQEELAKAVAESEPIYGITDRTAFQNSAVATLKAEDFDNLREARRRALYNISDESLSEYLAYTQVMIRLLNRLDLYKDYRAH
Ga0210407_1000006653	F022248	GGAG	METMLGFAGVVVITMLALFAALALQTALLHLTIRLMQPATADRRPMRVAVAHGTRMVARAFQMQR
Ga0210407_1000006659	F056112	GGAGG	MNDTKQRVVNFLEKEVKTYVALSLFLSKKSTRESLRAREKQALMQPAFYKERMKEAKKLVNELKKSN
Ga0210407_100000668	F000438	AGAAGG	MDKFEEIGKRLDEELTRLRKYLEEEIAPATEKRTAQALREASEKLSEAARKLEARIAARASQDSPETKS
Ga0210407_1000006691	F000173	GGAGG	MKTFEVQFRYRDRNEETVESTVKVEASSLPGAVGKAAREFVKGLDRKQRFDMNKNGLEITAKSVGTTEAQVDTSAEAAAS
Ga0210407_1000006692	F001983	AGGA	MTRKNTWVRLAVAVALSLPLAACKDTKTLQENEQLKTHVAELQKENGQVGNDLETMTAARDELAKENEALKAELKACKPKHSGKKAASRKHRRG