NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000050

Scaffold Ga0210407_10000050


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000050 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)160488
Total Scaffold Genes154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)122 (79.22%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000807Metagenome / Metatranscriptome883Y
F001463Metagenome / Metatranscriptome690Y
F014423Metagenome / Metatranscriptome263Y
F024595Metagenome / Metatranscriptome205Y
F031163Metagenome / Metatranscriptome183Y
F073937Metagenome / Metatranscriptome120Y
F094982Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000050100F014423AGGMRKVVLPALLLFTVAPFAAARQPAPQILGLRLGMSYAQVHSRLVEIGQFKSEDEGQQVWTLTHDQRFQYAIIGFDRDRQVRYVTVLARPDGKPVSYADVGDIAHATRSGGPGNLRYTWKLSDKRARFDYLVIAKGKDAHHLDRYAIKRLGLETEREDRD
Ga0210407_10000050106F031163AGGAGGVPGIGISVRLLLRFAALSCSIVCLPLYAQESSGKEDQKQLPLYTDPARKTFDVTFIPAVHDFRTNLMLSGAQSYILPRPRSDSSTFEKPLWASSPGAIQRMESAFYCNDTPFVDQVRLPLATFWRGRVKLVGFESDVTTANFVMGLPGQGALHNLSAFGGNGFLAVHTPPSDQLAGINMTFSWRSGDVESGESSGLRGIEHLVHASRGFLPFFSGRSDSSSAALP
Ga0210407_10000050107F001463AGAAGGMMLLALADRTMLNVNKKPPLIEDLREHSEEQLAELRFLLETGLTGRPDPRRPGFFELDGVANVYYVFRYPTGHKVLLLAAWQREVDPVAEMVAYSCPAA
Ga0210407_10000050122F094982GGAGGMISRSDGRNFHLLLADRPLPFPAELGGGPTRMSSVCFWYLYGADRSATRSTVVLLEGMFGPKANIFRQIEFIADLLADELLRHQSLAIFYNMQADRIQELSY
Ga0210407_10000050145F073937GAGGMKDRKIRMKNSAENKAPKNIRERLELIDQDMNLKLQTLASIFSGTQDYAEEFHLLYVQPLLESGLTLEDSLEMLVEGVIRPN
Ga0210407_10000050152F000807GGAGGMPCKSCGSVNQSKFTGEIGIHFPGLKNIDKAVVWVFPELIVCLDCGTAEFRVPEAELRQLAKGDPAAAG
Ga0210407_1000005068F024595N/AMLVALVPFCSVRLLSDARPSLLPQLKPGQTLLYEVHGRLNRAVKTESRVSSLRGPQQLQGDLSSQIRVSVQKVLAGKAHPTITVQTELLPVASAQTNPPVSPAQKVTFDIFGSGQLSNVNGLDDLSPEQRLVWQFWVARFAFGWTLPPARLKLGEKWKFEEPELNDSLIAGLVWERETTYARDDQCPVFPGETCAVFLTQSTLKQKSSTKDSTPEGYRLHELKTSGTAKGNNQVITYISRKTGLVLRANEDVQQSMDVSVMKSDGTNGVHYTVDATSHLETLFIPQPVVAPAP
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