Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000030 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	209274
Total Scaffold Genes	179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	157 (87.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

209274

Total Scaffold Genes

179 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

157 (87.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002142	Metagenome / Metatranscriptome	590	Y
F007192	Metagenome / Metatranscriptome	356	Y
F021344	Metagenome / Metatranscriptome	219	Y
F077419	Metagenome / Metatranscriptome	117	Y
F083552	Metagenome / Metatranscriptome	112	Y
F103954	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000030108	F007192	AGGA	MLRNPIRRTIAGLLALAFATSLVARGQFWDFLGRTQVDRSQDHGRIQITRRDLHFRTIQLRVSGETIFFDRLVVHFDGGTSQELMVSDRISPGGRNYVIDLLGERCLETVELWYYKEPWDHNPTVSVYGTNLPDSATQALVREH
Ga0210407_10000030156	F077419	AGGAGG	MQKMVGDDQKVSDAELMTLLRRTQEEIDAHSEMNEVNLLLRDFARELLKKRLLIRVQFALMMEVGQPGQSTRT
Ga0210407_10000030162	F103954	GGGGG	MESAFELWTGQAVVVLLTVGRIRLSLLGTLLKDQSETLLVKLEAGPEVEIPKTYVLAIEEPRPAGPKGQCPL
Ga0210407_10000030170	F083552	N/A	VGAKAEIDFLVEEGQIRTKAVVRHVEGASGMGLEFTAAAQEDRPRLGGLLTRLRSLSRPVERNNR
Ga0210407_10000030173	F002142	AGGAG	MKMSLTLLAALFLSATVATAGPKPQSGSVLSHTSVACGTKKSKKQDIDLLCQQYVIRSGTTDYTIRQPKPSEQTIIPLNTAIEFKLDKNRMKFKVDGKSFEFMVISQDAASSLAAAPATSTPNHQ
Ga0210407_1000003034	F021344	GAG	MVKRKKIRLEKGTEARRRARKSGLAPAGTRVIPDKRRKPEKHKLDMLQEVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000030

Overview

Ecosystem & Geography

Associated Families

Sequences