NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000018

Scaffold Ga0210407_10000018


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000018 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)254268
Total Scaffold Genes227 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)192 (84.58%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F000442Metagenome / Metatranscriptome1132Y
F000789Metagenome / Metatranscriptome891Y
F002349Metagenome / Metatranscriptome568Y
F002518Metagenome / Metatranscriptome552Y
F002885Metagenome / Metatranscriptome523Y
F002959Metagenome / Metatranscriptome517Y
F006297Metagenome / Metatranscriptome376Y
F015633Metagenome / Metatranscriptome253Y
F020961Metagenome / Metatranscriptome221Y
F038452Metagenome / Metatranscriptome166Y
F049791Metagenome / Metatranscriptome146Y
F050739Metagenome / Metatranscriptome145Y
F084773Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000018115F084773AGGMASPYDQMTKIDNPGGSTTTRSKQTERRGSRRCKFTQLMRIRPSDPERDPFEDIRGTLSVSRSGIFFQSSVTTYEVGMRLFVTMPYSKEAASMSREYLAEVVRRDLLPNGLFGVGFKILMEMGLPSGFGSAYSTNNR
Ga0210407_1000001814F050739AGGAGMASPVVSEKFRAVVCRHCSKPIRVPGLITRKEIEFQGLTDSGDIHHHLISRVFNVRCRSCERESVYSINQIVDYPFARAASATDREAAAL
Ga0210407_10000018150F006297N/AMIRNAQKIEYTPEPQSGQPAESGEGWLGRNNSEKRRLWERLNPRHRKELRMLAEALALQQNHARLPPAARERLDTALAELDRVIRRIAAILAELARRTPPPG
Ga0210407_10000018157F002349AGGAGGMVVCGVNHCAYCRAPIASGERWVREKVYDPALNGRDPSYHRYHAEPFAGQEASCWEKHQMETEIGRTNAYAA
Ga0210407_10000018178F020961GGAGMNCEEFAIAGLDRDLDAEELDSAAAREHLQGCPHCAALYESSLALRADLRELGQVTSDATAPSRVEMRLRQEFRTRHTTEKSRDKVVVASWLLAAATLVLVSTSLALWQRHGGLNTAKTQPSSGPAAAQSVATGPELGGTLIAENDGDDFALIPGAFPGLLDDTTVVRVQMQRGSLGALGLSVNEEHANDVVQVDLLVGADGQPQAYRLPQSSN
Ga0210407_10000018186F002959GGAGMDNQIPKYVTQSRAAYLLGLSVAEISRISRETGIGHVERAGHIEERFFTYEELQRICVLATQEGVVTH
Ga0210407_10000018193F002885GGAGMAWMRRVFGVPASETQMGLTLALCIFSMSLMAVALIWQAQVIAKQNAVIHLLETRFGG
Ga0210407_10000018209F000262AGGMKLSLWSGSLTLLGLLAAGCSGGNFGALQPNPEDLCKCIPIEPDILDFRHLAKHVPIPAVAAQEIGVDTILSWTQDTFVDPSAPRTGRELQVFHIANAFLQETSVNGADCDVHFEISQTADKSASRVIVETPVDSEFCAARQNVQSQLAKHGFKLDSQHGGELPQALPVEVLGMAFEDFDHSRGSAQVATIWELHPATVNLLP
Ga0210407_10000018210F002518AGAAGGMDNAPKCPVSGKRKYATEGAALATAKHQVATTDEVMELRAYRCNWCNAWHLTKKTEKTGKDRG
Ga0210407_10000018221F000789AGGAGGMAQRNSFTEMKAEQEKMSASWKAEGRLSEAWVVADPEIVEIFSAGVAFGMEVGRRGRSDPAYSPDEWRTALREAVEKAAVIEEKLERTKEGDAKKKEGE
Ga0210407_10000018223F049791GGAGGMPQVQMKQSYIPMTIYCGHCQQEQFIHMQARTGFWQMAHQSVKCVKCEQYFDVMIPDAIIAGPFLPLNLSSTK
Ga0210407_10000018225F000442GGAGGMLFATVSRGRNLGTRLLPHRFKDERYHVRLGKQGPYIPVTDYRDIPSYLANGYSLEMSNKAEKHNPSLIRPESIQGWIRTF
Ga0210407_1000001849F000789AGGAGGMAQRSSFAEMKAEQVKMTASWKAEGRLSEAWVVADPEIVEIFSAGIAFGMEVGRRGRTDPVYSPDEWRRALREAVESAAAVEDKLERAREAMPKKEKE
Ga0210407_1000001857F038452GGAGGVSASLLFFLFFALVVLALLLWASRSSKHQFAPDMDVFEALSQSRHCSRLAQILQALRPEDTEYLQQIGQAALMQALRQQRRRIARTYLDCLQEEFETLLEISRALAVMSPEVVGMEEMQRWRLSLAFAANCAFLRWRLRLGLRPFAGFTLLSDMATDIAGQLDTATTRIAEAAVRGSEPSAPGHENIGGR
Ga0210407_1000001874F015633GAGGVLYAVLVLLFLPYIAAAQAEPPKKVTWKSVEFAIVRFNDQAPNSWNIYHSEKKGILLVRLWKRYMLVKIQDEEVYDIDPQKITVRGDSAEWSYADIPEKPIEVVEWKERNIGSMQRVTFRFGKNGHVLELQIPLGLNREPMY
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