Scaffold Ga0210407_10000001

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000001
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072210
• Total Scaffold Genes: 917
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 628 (68.48%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Associated Families: 25

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000132	Metagenome / Metatranscriptome	1972	Y
F000260	Metagenome / Metatranscriptome	1431	Y
F000391	Metagenome / Metatranscriptome	1196	Y
F002139	Metagenome / Metatranscriptome	590	Y
F002926	Metagenome / Metatranscriptome	520	Y
F002979	Metagenome / Metatranscriptome	516	Y
F003650	Metagenome / Metatranscriptome	475	Y
F004142	Metagenome / Metatranscriptome	451	Y
F005152	Metagenome / Metatranscriptome	410	Y
F007046	Metagenome / Metatranscriptome	359	Y
F008958	Metagenome / Metatranscriptome	325	Y
F012912	Metagenome / Metatranscriptome	276	Y
F014165	Metagenome / Metatranscriptome	265	Y
F014416	Metagenome / Metatranscriptome	263	Y
F015671	Metagenome / Metatranscriptome	253	Y
F018873	Metagenome / Metatranscriptome	232	Y
F021069	Metagenome / Metatranscriptome	220	Y
F025531	Metagenome / Metatranscriptome	201	Y
F030505	Metagenome / Metatranscriptome	185	Y
F053507	Metagenome / Metatranscriptome	141	Y
F056822	Metagenome / Metatranscriptome	137	Y
F071561	Metagenome / Metatranscriptome	122	Y
F090964	Metagenome / Metatranscriptome	108	Y
F094757	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100000011	F002139	AGGA	MTNRVTYAPQDFQKMCKQAERDHESKKLVVLMERVKRQIAERENPGLLAKPKGPAKMVGADSGLLRLPSRSAPFDR
Ga0210407_10000001134	F004142	GAG	VFGRDGIWARFLRQAETYIATEVKYEPVGNGRYRVRDFWSGHRGFEIFRERYSEDFAEFDRRVVDELVEKQEFVGAYYEADGDEGFELEAKS
Ga0210407_10000001213	F030505	N/A	MPVLLFATVIASVSLGVFAAYAAVICVLNAFGPKSQHQSEPGRPRLVLLPTQHHASGD
Ga0210407_1000000122	F012912	N/A	MELLLNLAWLLLVLPAYWLWRGSRAFSADHNFNSWQSLLALACMLVILFPVVSATDDLHAMRAEMEESPAGKRTVRQSSNDNAPAWKRQSPPAVAGLTRSLVVTLEEWRPLATPRLILPAAPVIEQTGRAPPDSFPG
Ga0210407_1000000123	F003650	AGG	MERVHRVRRVFLVFFLSAFALGMAGCQLGLANVGHEVVEAPQATAQDEPRPGLAIENDSELPDTYPQAPYEMRFQAHGGISTLHWRVEKGVLPPGIKLEDDGLLHGRAERMGEFQFTVSVSDAGHHPGVQKGFVLRVRSALSLKWGKAPAHVNGNRIEGNVEVSNTTPDDIDLTFVVMAVAENGRATAIGYQHFMLRRGTVSKELPFGETLPNGGYAVHVDAVGEVAARNLIYRDKLDTPEPLQVAVRP
Ga0210407_10000001326	F008958	AGGAGG	MKLVRFEDINGRETFVNPDRVNHVSDYGSGTTEISFGDKEASVFVALEVSAVASTLLNAATPS
Ga0210407_10000001327	F094757	GGAG	MKIARCVVAGFLLSLACAYGQMIILSAPAKDPEVKPEQRTATIVHYERMRLATRATIRVLVLALQNTDGAPKAKLNEAINDQQDTVDWANWCILALRDKTDEAKACVFQPDPK
Ga0210407_10000001399	F000132	GGTGG	MLIEKLAAGVVQVQTPIGPRYVMPSFLQRVYLVWMFRNFPILPHAVLNGRQQRMIDRMCGEQRFASMAYADGMDEAPVIGTVEHRPPIQADQLPPRRPVSSESGALAAEARQRS
Ga0210407_10000001411	F053507	AGGAG	MKTKMNVTLAIRIAILTAVMVGTFVAATVQPVPAADGGPLILCPPGSKGCQSTLPPA
Ga0210407_10000001451	F021069	GGA	MAVNWLEFAQKMAQAARAGVAIERKRLQELLAERQRKQQPQSSSSSH
Ga0210407_10000001531	F000036	AGG	MAYKEIFWMACDSTEQLRAEYGPFHTREQAESEAKKLGFGYLLRYEHLLGEDEEIQEVRCIFVELPGAVPVGVESIPITLHTRCATCGESSAHEKGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEIGDWRG
Ga0210407_10000001552	F007046	GAG	VTIIVNLHGALIATAIGLSAGTKISIHVHMTDKRSAARVVYVDPENPLHCGIELEKPRNIWGVPLPPDDWEGIAAAEITR
Ga0210407_10000001553	F025531	AGG	MNSRDNQGPDREVRERIVNLMQSIGSGPKKQIPAEELEKLKSAASRLDQMLKAAANADQQTLKSAATKLDRLLDDIRAGKDVSSNLKRKGNSGT
Ga0210407_10000001554	F000391	GGTGG	MTPETQQSESPYCVRIETETGRSSTVPIAVLTAKQLEAFLQSEFKRLAQEAGVKGARIHVERATAADYEQVLREVAACLFSAKARAS
Ga0210407_10000001558	F002979	GAGG	VAKRPTKSEKSAKTTPPLRMFLVPCSCGMTFAVAQNYDHQGTAWSRYLTCPGCGKKHDPKNRLLQMGFHAEGYWKVDEC
Ga0210407_100000017	F056822	AGGAG	MSKVNGDKSRFNRVRRQNAAKRMRNRLLFKNAAAPAKPVAASDKKPVVA
Ga0210407_10000001708	F090964	GAG	MPRRWKPPKEDRTDAEAVRREERFQRDLSDILEYGTVEDFVALLKWHQPDIAKEELQTAIRQFHVYAREKRGLC
Ga0210407_10000001713	F071561	GAG	MRPLSALLSSILLMSFAQAQNKPEPIRLCVSTLQNSSRNVVDATWQRNQMMKVFERINKSKDVTKGKAARIETVLLESNSETDPAVRENNCQFILHTNLTEVIHSGSSDIGMRPRSTQIGNVGGDPRANGSDSNGATVEYRVMQAGILEEWTSGVVTEHDQLSDEMLVSRLMDQTANRVASELREHH
Ga0210407_10000001754	F014416	AGCAGG	MPKRVLTQEEGAVLTMIQQGYGAHNGADKVFFSPTDEAVIFVRLANGMSCLMANLSNLAARRADGTIVSDEELKTKWLRIKASEKPAENKAS
Ga0210407_10000001759	F014165	AGGA	MAVAKLKRPKEDTFEDLAERIAAEINERAAKMTSEDRAQADSETKKIAAQVQRRNP
Ga0210407_1000000178	F000260	AGGGGG	MKFTTKLALGVLTALAMLALTFAIPRGGPVREAQLVQFPMTVGVWAIFVLLFVKLK
Ga0210407_100000018	F018873	GGTGG	MSAPLIGFPVSGLLPSKLKNKRVLLVDTSATMRDRRAESMRKLGMEVDCAADIGEARSWWRADLYSLVLIDMESGLGHRDKFCDDMRRAIPPQQISFLVGKPGYLADAPNADEVPLVEKSGDRLDQSVREDIRAALAADLPGVMSQRWGILEASRRISAVRSLSHARSRATQDRPVPPRDLEGREVKRAAAASRTLDDLLREELQ
Ga0210407_10000001821	F005152	GGA	MKTTLLALFILAAATAFGQTGVSTLSNQPQIIESPSHPLHAEQHSLANETPLVGGGAYTYAQGERPLWEFGSPNPAPTPLGDVARAYRKEKQAARKAELVFEKQGS
Ga0210407_10000001832	F015671	GGAGG	MKGQTPLVTMLVTVLVTIFALVLAVPAFGKDKKHNDRAMIEKMEAVPCGAKERGITGLGSVFGSIGATHINSDEKLCPQYVLRTDDMEYHVRPLDHKHPFILPVGKEGEVKISKDVLVMRIPDGDHKKRRYQVVVMKPIDHAEISDAADSKTKYDSHKTYTDPALDAKTGSVQKSAVKPPTDPTSPPQ
Ga0210407_10000001856	F002926	AGGA	MAKLKLTSGMWRIDPQKWSRVIDRCGQPVASVEVDADPNTNASLIASAPDMFELLETLESNASIPESLQEEIQLVLRRARGDFGLAIFSRNAVRTFRARTQEWLRFMEGLWKPDRNAEQ