Scaffold Ga0208221_1000007

Overview

Basic Information

• Taxon OID: 3300020574
• Scaffold ID: Ga0208221_1000007
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47838
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (61.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Aurunvirus → Synechococcus virus STIM5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007569	Metagenome / Metatranscriptome	348	Y
F008402	Metagenome / Metatranscriptome	334	Y
F010764	Metagenome / Metatranscriptome	299	Y
F018913	Metagenome / Metatranscriptome	232	Y
F036765	Metagenome / Metatranscriptome	169	Y
F058114	Metagenome / Metatranscriptome	135	Y
F090316	Metagenome / Metatranscriptome	108	N
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208221_100000712	F101046	N/A	MDFTDYGISLEPEELREIITGKMGFRKCPDCQGEGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPSQYSFGECYLYKCDTCKGVGYIPISGY
Ga0208221_100000713	F090316	AGGAG	MPDDLQREEELFLKALEEYKEKKSQEPKDKTTNTLPAVIAAVL
Ga0208221_100000714	F018913	AGCAG	MTNQQKAEELLKVFWESQAHNPAWLLQETLQQLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELELL
Ga0208221_100000717	F010764	GGAG	MIEIQKNYKLTLTETQAKELYEFLRGAKDCGHLSTDRDLVLVYHELKKIFDTGIR
Ga0208221_100000720	F008402	N/A	MIDITTQIRIQNHADYWYTAEDLNVDLGCEGFTVSYWEIRKGEGDKRVNFIIMDKEEALALADAIYKLFKN
Ga0208221_100000722	F036765	N/A	MTIKATEFLKLFTKAEKLDLSVEVCEDKDGDYVIRIYEMFRSEGFDEKVVITQNGESNWNKGCYSFDCMMDVLDNMLEEKLLEEIKEQKRQELLARLTDFEKDLLGVK
Ga0208221_100000735	F007569	GGAGG	MKPEFSQRQYKLIYHAIRRYQIEKTVLNSSEYHDCNEILDELFDHVYTQHKEQVT
Ga0208221_10000074	F058114	N/A	MIEITFTREELRHLHEFLLKNHLQVKQSVIDKIDKEVIADEIFELLGDLECLDATLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAK