Scaffold Ga0207909_1002126

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1002126
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4955
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039511	Metagenome / Metatranscriptome	163	Y
F054862	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_100212612	F054862	N/A	MTRDQKNKAKQRLEVLELRLDGINALTENMSDKGGVEIASILDETRAEIASIAKTLATRWEFLFNFIGGGWNSEIAFTKEEAIEQALFKYGHPNTQTSLRVDVTSFRVSTPTDYNNQMSTFY
Ga0207909_10021264	F039511	GAG	MKPELKALEAKVKALRQAMELFDIFQQDDEVGSALAEVEAELDKFKFK