Scaffold Ga0207909_1002115

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1002115
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4980
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → unclassified Cytophagaceae → Cytophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027847	Metagenome / Metatranscriptome	193	Y
F054848	Metagenome / Metatranscriptome	139	Y
F101152	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_10021155	F054848	AGGA	MTTATITSNQAAALYTAGKSVDEVATELSITYGKARKLIAESGTPIRNTSDRLKGKTRKA
Ga0207909_10021156	F101152	GGAGG	MTGTNQREQIYVYGVCSLCAESNVLVYELDDNLLCAEHYRDRTRHIKRVTPCDKCGGDNAVRDPSHRRNEYLCWSCHEVNGFVIDNSVIKRAIVSLVNNFTRGSKIKCEAAGYGSDCDNNVKPRGPWGGRLLCNNHGKMPPKPEKGTKS
Ga0207909_10021158	F027847	AGG	MTNPFTAVIDWLDENGDVGGPIGAFIGVGIAVTLCFIFGA