Scaffold Ga0208465_1002141

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1002141
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3848
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F037113	Metagenome / Metatranscriptome	168	Y
F041644	Metagenome	159	Y
F064681	Metagenome	128	Y
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_100214111	F041644	AGGAGG	VSLDFILERLTSVQVGGFWALIQVIIYALVIYLGLVIISKITDKREREGKK
Ga0208465_100214112	F064681	GAG	MTHTLEECPNISSEYQDTCQECGELSACICLASLVDEWEIEKAGKEGESFAYRYQFKEKASDLVAYFGYASTYREAMDNIAHSVKCKEAGK
Ga0208465_10021412	F078660	AGAAGG	MKPVNFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATIISEREKA
Ga0208465_10021414	F002827	GGAGG	MNKEYYQAKADLCRGLAIKQMVEGEAGEAGANLIRMVNALNQINLINYKEEKDNERLHNNAGL
Ga0208465_10021415	F037113	GAGG	MNKSWTVWVGGSEINWKHYTHKIDAERIAEFWREVKGYDDVRVEEIA