Scaffold Ga0208229_1000216

Overview

Basic Information

• Taxon OID: 3300020569
• Scaffold ID: Ga0208229_1000216
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14848
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F009461	Metagenome / Metatranscriptome	317	Y
F015066	Metagenome / Metatranscriptome	257	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208229_100021611	F009461	N/A	LEIGLRRQNSGERMKINGITILWFMIATGLLAYAVSLWQTEIYNRGYWRGRATGWDMHRRMITIKQQSDEVFDYDKN
Ga0208229_100021620	F000468	AGG	MTVWTPDWKLTVAGVDYTDIAISDIAHQAGRDDIYTQPNPSYLQVALVALSGQTLPFQINDSLSLQVKDSSGTYVNLFGGDVTDVTVEVGATGSLATVVNYTILAMGSLVKLAKEIYNDNLSQDEDGDQIYELLSSVLLASWNDVPAATTWATYNATETWATAGNQGLGEIDQPGLYTMSSRSADPDTVYNIASFIADSAFGYLYEAPNGDIGYADADHRQTYLIANGYVDLDAKHALGQGLSTITRSADIRNDIYINYGNNFNSQATATSTESIGLYGYKAENISSAIHSGVDAQEVADRYIDQRAFPLAAFQSITFPITNPQIDNSDRDNLLGVFMGQPLNIQNLPTQISNGVFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPITEAWNTLDPTLTWEYATIVS
Ga0208229_100021627	F015066	N/A	AFAELLVRELAASYAQKTDQYAAQIASQNASASTGASIYASIVDGISDSYGVMRFTPNRLLVAPSGGTNGIDFAGLLAATADSRPLFAAAAPQNAAGVITQGSTNGTVAGLDLVVSPNYTGDDANAKHALVYPSQAMRFHESGTVELRANIVANGRIEIGIYGYVCVVNRYPTAFRKLAV
Ga0208229_10002166	F037698	AGGAG	MCANHDEMTHQINWAYQNELRKQWLLDHPDAQYIGWMSI
Ga0208229_10002167	F002162	N/A	MPNYDYMCDGEGLLIVLDLPMDHKIPHCQVCNAPLRRVFTAVPTIFRGTGWAGKDG
Ga0208229_10002168	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGIVVEPSVVTCDLCNDDRLLHEGDLLRCYSCHAINRIPYHA
Ga0208229_10002169	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDAADPAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKTGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVAEIGAAIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPNWATLTANGKWYFKGGE