NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1001401

Scaffold Ga0208222_1001401


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1001401 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6762
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F003748Metagenome / Metatranscriptome470Y
F086598Metagenome / Metatranscriptome110N
F086618Metagenome110N
F090064Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208222_10014011F003748N/AMFKVNRKDAGGSYINAEGEYTVTVTKVEETLDAKGREVCKVTFATEDGSSIADRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGKKGSYANFLRSMIGLELAITVRTEEYESNGEK
Ga0208222_100140111F090064GGAGGMKVYWTAFYGRSEYTFQGRNAKRDAHRLVKRFGGRVVREIIKSHE
Ga0208222_100140114F086618N/AMKSIQRIETAVDNLINGNLTHARKSARGLTYSDIFDWLTGPVGWTENRSRACADYLIGRIDYRTYCKSDR
Ga0208222_10014014F086598N/AMETDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALKRSSYQDVDDDDTWEGFGPKPECQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEARLGRKIFENPLATT
Ga0208222_10014017F001964GGAGGMIRNQFAPPKFKVQISGAIGWSDLKERVVSYQTVEFSTRKEADRAAKELNPGEYTQGRIRVVPFEMAEDYDVYPTPERSKP
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