Scaffold Ga0208718_1000372

Overview

Basic Information

• Taxon OID: 3300020565
• Scaffold ID: Ga0208718_1000372
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8124
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F020168	Metagenome / Metatranscriptome	225	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208718_10003721	F020168	GAG	MYDILGSLIGILLIAFLFSPIVLAVYMWNGAKFDNDNDGKDDLPNRW
Ga0208718_100037211	F050376	AGG	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0208718_100037214	F005531	GGAG	MTITYTLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVETK