NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207934_1001289

Scaffold Ga0207934_1001289


Overview

Basic Information
Taxon OID3300020561 Open in IMG/M
Scaffold IDGa0207934_1001289 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3645
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003690Metagenome / Metatranscriptome473Y
F005531Metagenome / Metatranscriptome397Y
F017134Metagenome / Metatranscriptome242Y
F026557Metagenome / Metatranscriptome197Y
F050376Metagenome / Metatranscriptome145Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0207934_100128910F001562AGGMEKTQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMENE
Ga0207934_100128911F000447AGGAGGMGYVEIFRIDDEGAGWVDLSEATPNELLDLEIGLFQEGAL
Ga0207934_100128912F050376AGGMTLDEYKAYVEASRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0207934_100128914F003690GAGGMTINGFELHITNEYGFELDSFLGAIYLPWHTIILTALAVVAYKAYKKWGTRK
Ga0207934_100128915F005531N/AWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVETK
Ga0207934_10012892F017134GAGGMELFTVSCLNYEICGAQETFDNDSEYEIYGDDYICAECYASEEMEFFETIGWSDSDALASAGHGMDEDY
Ga0207934_10012895F076101GGAMYKITLAYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKNFYRSGMVVAK
Ga0207934_10012896F026557GAGGMINSVMRIDCSECNSTGLIFFGDNNNFDVETCDCDFGKEQDLFFN
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