NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1005101

Scaffold Ga0208852_1005101


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1005101 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2997
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011646Metagenome / Metatranscriptome288Y
F029021Metagenome189Y
F034906Metagenome173Y
F069714Metagenome123N
F103146Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10051012F034906AGGTGGMKNTHRVKAAADQAVRQRNYQRARQRAFTRLANTYPDTYRLYIEEEKMADEKMGKKWLDIDGNTKPTVSGSR
Ga0208852_10051013F011646GAGGMSNVLELRNGSAKRIIFYEVADQQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV
Ga0208852_10051014F103146GAGMAEPRYLMGDDYALNGVEGEEEIGDTGLPDRMWEDED
Ga0208852_10051015F029021AGGAGMKDLCQFCGWEIARPDWYHRYNGKLICDNCVMDTMSERERERANG
Ga0208852_10051016F069714GAGGMKVEIKESYMPEYTKAITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPAWLEKAEQEDPDFSFMFFIDNLAWEYEQRKERV
Ga0208852_10051017F006842AGGAGGMKATPAICGDHLTLITECGCLDYLREIESSAKRLIQLTKEREEMK
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