Scaffold Ga0208362_1000380

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1000380
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15045
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F002241	Metagenome / Metatranscriptome	579	Y
F004233	Metagenome	447	Y
F004430	Metagenome / Metatranscriptome	438	Y
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_100038014	F004430	AGG	MAKPREVLEMLIPNGGWAISGDEYEGIQFLECEPITKAQFEAGFAQYDAWKAEQDAAKAGQKAALLNRLGITEDEAKLLLS
Ga0208362_100038016	F004233	N/A	MTLWTPEWRIKVNGDTLTSVTLSNLTITSGRQDINSPTPPGYCSLQVINTDGTNYTFTINSGVSVEVKDSDGDYVSIFGGRISDLRQVVQSAGSSAVVTSLRITAVGALSRLQRAIFDGNLAEGLDGAQITDLLDDLLLNSWNEVPPAETWATYDATETWADAQNIGLGEIDTGEYTMVSRQITDSIIAPIANQIANSALGYLYEDANGLIGYADASHRQDYLVANGYTNLDASHAIASGIGVIQRQGDLANKIVMDYGNNFNSSYTAQDTTSQATFGLFAEQFSSYLKNTADVEDVADRLIALRSYPRNTFQSITFPLQSPEIDDTDRDALLNIFMGQPVRITNLPLNILGGEFTGFVEGWSFSASVSGLSLTFLATPTEFSAVAQQWAQVNASESWNSVLNTLEWQDAIGVIS
Ga0208362_10003803	F002241	AGGAG	MGRQGMSRPHSIGYIKQLMEWGFDKEFIARDCGINLASLETRLRRSKERERRNGNQGTESGTSSSESNS
Ga0208362_10003804	F000545	N/A	MDENRCRWALGLPEMRQDAHPFKCSNCALVTAHIELKRYETSDIAEAPEEVWLIECQRCFLQRIIYPSDRVTTKEDDILRCEQCGGWKMKSGKCRVCRIAAGFEKQMEKYWTGGNTLERPYDATL
Ga0208362_10003806	F059096	GGA	MTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAISDFAGREKLDVELPR
Ga0208362_10003808	F014613	N/A	MLPNLSDEAVASIIIGVPFIGLYIWSLWNSSKAKAFNEGYKRGRSSVRFTEIVK
Ga0208362_10003809	F014016	GGAG	MINKVALIRFDSQAGAWTDNTNWVKGSIIRRFAKERMGKQQLRGRLSKAEISAYWLDKYGVNADVA